Browse Element(s) Details


Os.50845.1.S1_at

Description gb:AK058953.1
DB_XREF= gi:32968971
TID=Os.50845.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-A11, full insert sequence.
FL= gb:AK058953.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3057011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30530Os.8428.1.S1_at11/115+17612112..1761479840S ribosomal protein S4, putative, expressed
LOC_Os05g30530Os.47405.1.A1_s_at11/115+17612112..1761479840S ribosomal protein S4, putative, expressed
LOC_Os05g30530Os.40563.1.S1_x_at1/115+17612112..1761479840S ribosomal protein S4, putative, expressed
LOC_Os05g30540Os.47130.4.A1_x_at4/115+17617793..17619303retrotransposon protein, putative, unclassified
LOC_Os05g30540OsAffx.28164.2.S1_at1/115+17617793..17619303retrotransposon protein, putative, unclassified
LOC_Os05g30550Os.28943.1.S1_x_at4/115+17620169..17623346retrotransposon protein, putative, unclassified
LOC_Os05g30560OsAffx.10711.1.S1_x_at2/115+17624022..17626922retrotransposon protein, putative, unclassified
LOC_Os05g30560Os.27544.1.A1_at1/115+17624022..17626922retrotransposon protein, putative, unclassified
LOC_Os05g30560OsAffx.10711.1.S1_at1/115+17624022..17626922retrotransposon protein, putative, unclassified
LOC_Os05g30570Os.50845.1.S1_at11/115+17633492..17635002heavy metal-associated domain containing protein, expressed
LOC_Os05g30580Os.52085.1.S1_at11/115+17639694..17642149Subtilisin N-terminal Region family protein, expressed
LOC_Os05g30590NANA5+17643967..17645306hAT family dimerisation domain containing protein
LOC_Os05g30600OsAffx.27087.1.S1_at11/115+17645635..17646478hypothetical protein
LOC_Os05g30610Os.28346.3.S1_x_at8/115+17649421..17655139retrotransposon protein, putative, unclassified
LOC_Os05g30620Os.57089.1.S1_at4/115+17657038..17657532hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030001biological_processmetal ion transport
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50845.1.S1_at--105--4591Chr05:17634014..17634038 (25 bp)
GCGCAGCAGCCCAGTGAGCCCAAGA
LOC_Os05g30570
Os.50845.1.S1_at--353--2931Chr05:17633948..17633972 (25 bp)
AAGGCAGGTGAAGCCACCATGGCCA
LOC_Os05g30570
Os.50845.1.S1_at--424--4691Chr05:17633909..17633933 (25 bp)
GCGGCATCAACGCAGGGCAACCACA
LOC_Os05g30570
Os.50845.1.S1_at--823--1891Chr05:17633839..17633863 (25 bp)
ACGTCATGAGCTACAACGTGGCGCG
LOC_Os05g30570
Os.50845.1.S1_at--820--971Chr05:17633728..17633752 (25 bp)
AGGAGCACTCGTACGCGTACTCGCC
LOC_Os05g30570
Os.50845.1.S1_at--759--6991Chr05:17633712..17633736 (25 bp)
GTACTCGCCGTACTACTCGCAGTCT
LOC_Os05g30570
Os.50845.1.S1_at--1053--8371Chr05:17633577..17633601 (25 bp)
GGCGAGGAACTCCTACGGCGACCTT
LOC_Os05g30570
Os.50845.1.S1_at--633--4291Chr05:17633566..17633590 (25 bp)
CCTACGGCGACCTTTTCAGCGACGA
LOC_Os05g30570
Os.50845.1.S1_at--532--5611Chr05:17633543..17633567 (25 bp)
GACAACGCCAACTCTTGCAGCGTCA
LOC_Os05g30570
Os.50845.1.S1_at--527--4651Chr05:17633524..17633548 (25 bp)
GCGTCATGTGAAACCAAGCTCGAAA
LOC_Os05g30570
Os.50845.1.S1_at--369--6751Chr05:17633493..17633516 (24 bp)
GTTCAGATTACATGTTTAGACTTGC
LOC_Os05g30570
Target Sequence 
GCGCAGCAGCCCAGTGAGCCCAAGAGGAGAAGGAAGCAGCAGCCGCCGCAGCAGCAGAAAGAGGAGAAGGCAGGTGAAGC
CACCATGGCCACGGCGGCGGCGGCGGCGGCATCAACGCAGGGCAACCACACGAGCCACCACTTCCCGGCGGCGCCATTGC
AGCAGCAGCCGGTGCACGTCATGAGCTACAACGTGGCGCGGCCGAGCTCGAGCGCGGCGTACTACGCCGCNGCGCGTNCC
TGCATCCGCCGCGAGGCNTCCACCTCCATTGCCGCCGGCGCCGCCGCAGGAGCACTCGTACGCGTACTCGCCGTACTACT
CGCAGTCTCAGCCGTCGCCTTACCGCTACGGNGGNTACTACAGCTACTACTACTACGGCGGCGGCGGCGGCGGCGGTGGC
GGCGGCCAGAGGACGCCGCAGAGGAGCGCGGCCTCGCCGGCGAGGAACTCCTACGGCGACCTTTTCAGCGACGACAACGC
CAACTCTTGCAGCGTCATGTGAAACCAAGCTCGAAAAAATTAGTTCAGATTACATGTTTAGACTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis