Browse Element(s) Details


Os.50864.1.S1_x_at

Description gb:AK059064.1
DB_XREF= gi:32969082
TID=Os.50864.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50864 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-G08, full insert sequence.
FL= gb:AK059064.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5597011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55940Os.18175.1.S1_at11/114+33095564..33099970Vacuolar cation/proton exchanger 3, putative, expressed
LOC_Os04g55950OsAffx.4187.1.S1_x_at11/114+33106151..33106677expressed protein
LOC_Os04g55950OsAffx.4187.1.S1_at11/114+33106151..33106677expressed protein
LOC_Os04g55960Os.15108.1.S1_at11/114+33110785..33116798NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os04g55970Os.9597.1.S1_at11/114+33122912..33127493AP2 domain containing protein, expressed
LOC_Os04g55970Os.50864.1.S1_x_at11/114+33122912..33127493AP2 domain containing protein, expressed
LOC_Os04g55980OsAffx.14430.1.S1_s_at11/114+33128815..33129441expressed protein
LOC_Os04g55980Os.51427.1.S1_at11/114+33128815..33129441expressed protein
LOC_Os04g55990OsAffx.14431.1.S1_x_at11/114+33130600..33131006hypothetical protein
LOC_Os04g56000OsAffx.14430.1.S1_s_at11/114+33133083..33133373hypothetical protein
LOC_Os04g56010OsAffx.14430.1.S1_s_at11/114+33141552..33141881hypothetical protein
LOC_Os04g56020Os.40855.2.S1_x_at10/114+33145067..33147112hypothetical protein
LOC_Os04g56020Os.40855.4.S1_x_at4/114+33145067..33147112hypothetical protein
LOC_Os04g56020Os.40855.4.S1_at1/114+33145067..33147112hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007389biological_processpattern specification
GO:0009887biological_processorgan morphogenesis
GO:0019827biological_processstem cell maintenance
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50864.1.S1_x_at--303--5651Chr04:33127134..33127158 (25 bp)
GACAGGAGGAGAAGACTCTGCTAAC
LOC_Os04g55970
Os.50864.1.S1_x_at--191--5971Chr04:33127142..33127166 (25 bp)
GAGAAGACTCTGCTAACAAAACGAT
LOC_Os04g55970
Os.50864.1.S1_x_at--490--4831Chr04:33127153..33127177 (25 bp)
GCTAACAAAACGATGCAGCGCAAGC
LOC_Os04g55970
Os.50864.1.S1_x_at--510--3671Chr04:33127207..33127231 (25 bp)
CTTTTGTAGCTTTGTTTTCTTGTGC
LOC_Os04g55970
Os.50864.1.S1_x_at--366--10331Chr04:33127222..33127246 (25 bp)
TTTCTTGTGCTTTTGTCATCGCTGA
LOC_Os04g55970
Os.50864.1.S1_x_at--511--7131Chr04:33127236..33127260 (25 bp)
GTCATCGCTGAGCTTTGTTTGCCGC
LOC_Os04g55970
Os.50864.1.S1_x_at--163--10811Chr04:33127250..33127274 (25 bp)
TTGTTTGCCGCTCAGCTTCTTTTGA
LOC_Os04g55970
Os.50864.1.S1_x_at--369--4911Chr04:33127264..33127288 (25 bp)
GCTTCTTTTGAGCTTTTCTTTCTAC
LOC_Os04g55970
Os.50864.1.S1_x_at--1063--5911Chr04:33127273..33127297 (25 bp)
GAGCTTTTCTTTCTACTGACATGAT
LOC_Os04g55970
Os.50864.1.S1_x_at--610--1971Chr04:33127287..33127311 (25 bp)
ACTGACATGATTCTGCAAGTGCCAT
LOC_Os04g55970
Os.50864.1.S1_x_at--1157--3211Chr04:33127302..33127326 (25 bp)
CAAGTGCCATGATAGCTTAGCCCAT
LOC_Os04g55970
Target Sequence 
GACAGGAGGAGAAGACTCTGCTAACAAAACGATGCAGCGCAAGCATATTGTTTTATTTTACTGCCCTTTTACCCTTTTGT
AGCTTTGTTTTCTTGTGCTTTTGTCATCGCTGAGCTTTGTTTGCCGCTCAGCTTCTTTTGAGCTTTTCTTTCTACTGACA
TGATTCTGCAAGTGCCATGATAGCTTAGCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50864.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis