Browse Element(s) Details


Os.50910.2.S1_x_at

Description gb:AK059412.1
DB_XREF= gi:32969430
TID=Os.50910.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033116K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-C11, full insert sequence.
FL= gb:AK059412.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g451609/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45080OsAffx.26468.1.S1_at10/114+26450084..26452902expressed protein
LOC_Os04g45090Os.14694.1.S1_at11/114+26455262..26457648Cytochrome b561 family protein, expressed
LOC_Os04g45100OsAffx.14271.1.S1_at11/114+26458907..26459637expressed protein
LOC_Os04g45110OsAffx.26469.1.S1_at11/114+26460405..26461755Serpin family protein
LOC_Os04g45110OsAffx.26469.2.S1_x_at2/114+26460405..26461755Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_x_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45130OsAffx.14273.1.S1_at11/114+26465542..26466563heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os04g45140Os.26579.1.S1_at11/114+26470776..26473578expressed protein
LOC_Os04g45160OsAffx.14274.1.A1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.1.S1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.2.S1_x_at9/114+26476543..26481414expressed protein
LOC_Os04g45170OsAffx.26672.1.S1_x_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45170Os.56192.1.S1_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45180Os.52243.1.S1_at11/114+26490184..26493410EF hand family protein, expressed
LOC_Os04g45190Os.11087.1.A1_at11/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_x_at6/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_at4/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190Os.24612.1.A1_at1/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45200Os.54567.1.S1_at11/114+26497361..26500426expressed protein
LOC_Os04g45200Os.54567.1.S1_x_at10/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_at5/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_x_at3/114+26497361..26500426expressed protein
LOC_Os04g45200Os.56488.1.S1_at1/114+26497361..26500426expressed protein
LOC_Os04g45210Os.49185.1.S1_at11/114+26500992..26501945Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os04g45220OsAffx.26471.1.S1_at11/114+26502932..26503540hypothetical protein
LOC_Os04g45230OsAffx.4096.1.S1_at11/114+26506311..26506652hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50910.2.S1_x_at--1017--5651Chr04:26479004..26479028 (25 bp)
GACAGGACTCTGGATATCGTCTTCC
LOC_Os04g45160
Os.50910.2.S1_x_at--321--511Chr04:26479019..26479043 (25 bp)
ATCGTCTTCCCGGACTGGTCATTTT
LOC_Os04g45160
Os.50910.2.S1_x_at--461--2451Chr04:26479444..26479468 (25 bp)
AACATAAAGCCGTGGGATGCCCTGC
LOC_Os04g45160
Os.50910.2.S1_x_at--222--611Chr04:26479460..26479484 (25 bp)
ATGCCCTGCGGCAAGACCTGAAGGA
LOC_Os04g45160
Os.50910.2.S1_x_at--213--1531Chr04:26479545..26479569 (25 bp)
AGCAGTTGCTGTGACACGGCAGGAA
LOC_Os04g45160
Os.50910.2.S1_x_at--524--2251Chr04:26479744..26479768 (25 bp)
AAATTTGGGTAGTCAATGCACGCAC
LOC_Os04g45160
Os.50910.2.S1_x_at--553--3011Chr04:26479758..26479896 (25 bp)
AATGCACGCACAGGTACAAGATCTA
LOC_Os04g45160
Os.50910.2.S1_x_at--568--7111Chr04:26479906..26479930 (25 bp)
GTCAGCATGGTCAGTCAGTCAGAAA
LOC_Os04g45160
Os.50910.2.S1_x_at--791--8671NONE
TGTGATTCAATGACCTATTCAAATG
NONE
Os.50910.2.S1_x_at--1145--311Chr04:26481294..26481318 (25 bp)
ATACGGTGTTACTCATTTCATATTA
LOC_Os04g45160
Os.50910.2.S1_x_at--974--9791Chr04:26481409..26481433 (25 bp)
TAACGCATATCATGCCACCTTTATG
NONE
Target Sequence 
GACAGGACTCTGGATATCGTCTTCCCGGACTGGTCATTTTGGGGCTGGCCAGAGATCAACATAAAGCCGTGGGATGCCCT
GCGGCAAGACCTGAAGGATGGCAATAATAGGGTGAAATGGTTGGATAGAGTACCTTATGCATACTGGAAAGGAAATCCAG
CAGTTGCTGTGACACGGCAGGAATTGGTTAACTGTAATGTCTCTACTACAAAAGATTGGAATGCAAGGATCTACAAACAG
GATTGGTTCAGAGAGAGCAAGGCAGGGTACAAGGACTCAAATTTGGGTAGTCAATGCACGCACAGGTACAAGATCTATAT
AGAAGGGTCAGCATGGTCAGTCAGTCAGAAATATATTCTAGCATGTGATTCAATGACCTATTCAAATGTCCAAACATTTA
GAGAATTTGAAATACGGTGTTACTCATTTCATATTATTTTTCTTCTTTTTGCTAGATTTAGTGTTTGCTTTGTAAAGCCA
TTGTAACAGACAGATATAATAATCTGAACTGTTCAGAAGATATTCTTAACGCATATCATGCCACCTTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50910.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis