Browse Element(s) Details


Os.50985.1.S1_at

Description gb:AK059951.1
DB_XREF= gi:32969969
TID=Os.50985.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50985 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-211-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-B08, full insert sequence.
FL= gb:AK059951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3626011/11Soluble inorganic pyrophosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36200NANA5+21383025..21386261retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g36210OsAffx.16109.1.S1_at11/115+21390828..21391733hypothetical protein
LOC_Os05g36220OsAffx.24383.1.S1_at3/115+21391977..21394211transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g36230OsAffx.24188.1.S1_x_at1/115+21396048..21398667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g36230OsAffx.24188.1.S1_at1/115+21396048..21398667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g36240OsAffx.28294.3.S1_x_at11/115+21398937..21401641hypothetical protein
LOC_Os05g36240OsAffx.28294.2.S1_at8/115+21398937..21401641hypothetical protein
LOC_Os05g36240OsAffx.28294.2.S1_x_at8/115+21398937..21401641hypothetical protein
LOC_Os05g36240Os.10038.1.S1_s_at1/115+21398937..21401641hypothetical protein
LOC_Os05g36250OsAffx.14983.1.S1_at11/115+21405209..21405721hypothetical protein
LOC_Os05g36260Os.50985.1.S1_at11/115+21408757..21410423Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os05g36270Os.25619.1.S1_at10/115+21410700..21413652Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os05g36280Os.10246.2.S1_at11/115+21416261..21416993Histone H3, putative, expressed
LOC_Os05g36290Os.11355.1.S1_at11/115+21417384..21421062Actin-1, putative, expressed
LOC_Os05g36300OsAffx.27197.1.S1_at5/115+21425089..21425355expressed protein
LOC_Os05g36310Os.55524.1.S1_at10/115+21426203..21427428Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g36320OsAffx.5118.1.S1_x_at3/115+21428656..21429066hypothetical protein
LOC_Os05g36330OsAffx.5136.1.S1_at4/115+21429425..21429628hypothetical protein
LOC_Os05g36340Os.52777.1.S1_s_at11/115+21431220..21432061expressed protein
LOC_Os05g36350OsAffx.4540.1.S1_at11/115+21434936..21436624pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016020cellular_componentmembrane
GO:0016462molecular_functionpyrophosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50985.1.S1_at--131--8711Chr05:21409421..21409540 (25 bp)
TGTCCTCATGCAGGAACCAGTTCTT
LOC_Os05g36260
Os.50985.1.S1_at--420--2811Chr05:21409737..21409761 (25 bp)
AAGATCATAGCTGTCTGCGCCGATG
LOC_Os05g36260
Os.50985.1.S1_at--116--1191Chr05:21409768..21409792 (25 bp)
AGTACCGCCATTTCAATAATCTCAG
LOC_Os05g36260
Os.50985.1.S1_at--113--371Chr05:21409783..21409807 (25 bp)
ATAATCTCAGCGAGCTTTCTCCTCA
LOC_Os05g36260
Os.50985.1.S1_at--743--4731Chr05:21409966..21409990 (25 bp)
GCTGTCAATGACTTCTTGCCTGCTC
LOC_Os05g36260
Os.50985.1.S1_at--334--4811Chr05:21409996..21410020 (25 bp)
GCTCGTGAAGCAATCCAGTACTCTA
LOC_Os05g36260
Os.50985.1.S1_at--791--9891Chr05:21410014..21410128 (25 bp)
TACTCTATGGATCTGTACGCACAGT
LOC_Os05g36260
Os.50985.1.S1_at--152--9951Chr05:21410119..21410143 (25 bp)
TACGCACAGTACATTCTGCAGAGCT
LOC_Os05g36260
Os.50985.1.S1_at--13--4691Chr05:21410148..21410172 (25 bp)
GCGGTAGAGCGTATTCCAATTTTTT
LOC_Os05g36260
Os.50985.1.S1_at--1036--10052Chr05:21410307..21410331 (25 bp)
TAGTCTGTATTTCGGCATTACTCAT
LOC_Os05g36260
Os.50985.1.S1_at--484--9731Chr05:21410345..21410369 (25 bp)
TCAAGGCTTGTGCTTTGATCTATGT
LOC_Os05g36260
Target Sequence 
TGTCCTCATGCAGGAACCAGTTCTTCCTGGTTCATTCCTCCGAGCCAGGGCCATTGGTCTCATGCCTATGATTGACCAGG
GAGAGAAGGATGACAAGATCATAGCTGTCTGCGCCGATGATCCTGAGTACCGCCATTTCAATAATCTCAGCGAGCTTTCT
CCTCATCGCCTTCAGGAAATCCGGCGCTTCTTTGAAGACTACAAGAAGAATGAGAACAAGGAGGTTGCTGTCAATGACTT
CTTGCCTGCTCCGACAGCTCGTGAAGCAATCCAGTACTCTATGGATCTGTACGCACAGTACATTCTGCAGAGCTTGAAGC
GGTAGAGCGTATTCCAATTTTTTGATTTACGAATTCTTCCCGTGAGCTCAAGCAAAGAGTGGCTCTGCAGAACAGTTAAG
ATCTGATGCATAGCCAAGTTATATGGGTTATGTATGTCAACAAATCATTGCTCCCCCCCCCCCCCAGAGATGTATTAGTC
TGTATTTCGGCATTACTCATTTGGAAATTTGTTTCAAGGCTTGTGCTTTGATCTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis