Browse Element(s) Details


Os.5101.1.S1_at

Description gb:AK071661.1
DB_XREF= gi:32981684
TID=Os.5101.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5101 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 21652 calmodulin-related protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105D07, full insert sequence.
FL= gb:AK071661.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1358011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13540OsAffx.4325.1.S1_at11/115+7487913..7489303hypothetical protein
LOC_Os05g13550OsAffx.4326.1.S1_at11/115+7498227..7498694hypothetical protein
LOC_Os05g13560NANA5+7500671..7500967hypothetical protein
LOC_Os05g13570OsAffx.19542.3.S1_x_at7/115+7509039..7511546retrotransposon protein, putative, unclassified
LOC_Os05g13580Os.5101.1.S1_at11/115+7512956..7513896EF hand family protein, expressed
LOC_Os05g13590OsAffx.26866.1.S1_at11/115+7515488..7519847hypothetical protein
LOC_Os05g13590OsAffx.14673.1.S1_at10/115+7515488..7519847hypothetical protein
LOC_Os05g13600NANA5+7520740..7522875retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.1.S1_x_at9/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.2.S1_x_at7/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.3.S1_x_at6/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.5.S1_x_at3/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13620Os.32021.1.S1_at11/115+7531814..7533163Glycine-rich RNA-binding protein GRP2A, putative, expressed
LOC_Os05g13630Os.52857.1.S1_at11/115+7537387..7538520RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009409biological_processresponse to cold
GO:0009612biological_processresponse to mechanical stimulus
GO:0009646biological_processresponse to absence of light
GO:0009733biological_processresponse to auxin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010038biological_processresponse to metal ion
GO:0019722biological_processcalcium-mediated signaling
GO:0042542biological_processresponse to hydrogen peroxide
GO:0048574biological_processlong-day photoperiodism, flowering
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5101.1.S1_at--368--5811Chr05:7513455..7513479 (25 bp)
GACGCCGACAGCAACGGGAAGATCT
LOC_Os05g13580
Os.5101.1.S1_at--684--5691Chr05:7513259..7513283 (25 bp)
GACTCCGTATGGTTGCCCGGTCAAA
LOC_Os05g13580
Os.5101.1.S1_at--898--4531Chr05:7513245..7513269 (25 bp)
GCCCGGTCAAAGTTTTATCTGTTCT
LOC_Os05g13580
Os.5101.1.S1_at--1052--471Chr05:7513229..7513253 (25 bp)
ATCTGTTCTTGCATGGTTTCCGTAA
LOC_Os05g13580
Os.5101.1.S1_at--997--4991Chr05:7513219..7513243 (25 bp)
GCATGGTTTCCGTAATTAGAAGCTT
LOC_Os05g13580
Os.5101.1.S1_at--224--4211Chr05:7513135..7513159 (25 bp)
CCCCACTGATTTGATGGGTAGTGAT
LOC_Os05g13580
Os.5101.1.S1_at--758--2891Chr05:7513099..7513123 (25 bp)
AAGGTAGTGGAGTGACATGCTGTAT
LOC_Os05g13580
Os.5101.1.S1_at--248--5671Chr05:7513086..7513110 (25 bp)
GACATGCTGTATTACTGTTTCTGAT
LOC_Os05g13580
Os.5101.1.S1_at--163--9931Chr05:7513058..7513082 (25 bp)
TACTGTACAACTTGACTAATGTTCA
LOC_Os05g13580
Os.5101.1.S1_at--799--7691Chr05:7513026..7513050 (25 bp)
GGGTGTATAAACAAGCTTGGGCAAA
LOC_Os05g13580
Os.5101.1.S1_at--740--2311Chr05:7513004..7513028 (25 bp)
AAAGGGATTGCCGTCCAGCCTGGGC
LOC_Os05g13580
Target Sequence 
GACGCCGACAGCAACGGGAAGATCTCGGCGCGGGAGCTCCACCGCGTGCTCCGCCAGCTCGGCGACAAGTGCTCCGTCGC
CGACTGCTCCCGGATGATCCGGTCCGTCGACGCCGACGGCGATGGCTGCGTCAANTTCGACGAGTTCAAGAAGATGATGG
GCGGCGGCGGCGGCCGGCGGTAGGCTGGAGGGGACTGACTCCGTATGGTTGCCCGGTCAAAGTTTTATCTGTTCTTGCAT
GGTTTCCGTAATTAGAAGCTTATAAATCAAGCCTAATATTTAGCATGTGAACAACTTTTTAAGTAGATTTTAAAAAAGCC
CCCCACTGATTTGATGGGTAGTGATGTAATCATGCAAAGGTAGTGGAGTGACATGCTGTATTACTGTTTCTGATATATAC
TGTACAACTTGACTAATGTTCAANNTGATGGGTGTATAAACAAGCTTGGGCAAAGGGATTGCCGTCCAGCCTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis