Browse Element(s) Details


Os.51035.1.S1_at

Description gb:AK060284.1
DB_XREF= gi:32970302
TID=Os.51035.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51035 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-006-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-006-C01, full insert sequence.
FL= gb:AK060284.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1226011/11Diacylglycerol kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12210NANA12+6702547..6705879transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12220OsAffx.19623.1.S1_x_at11/1112+6709871..6711004hypothetical protein
LOC_Os12g12230OsAffx.19624.1.S1_at6/1112+6714309..6716015expressed protein
LOC_Os12g12240Os.52242.1.S1_at1/1112+6719650..6723790transposon protein, putative, Mariner sub-class
LOC_Os12g12250OsAffx.31660.3.S1_x_at10/1112+6724378..6726039hypothetical protein
LOC_Os12g12250OsAffx.31660.2.S1_x_at6/1112+6724378..6726039hypothetical protein
LOC_Os12g12250OsAffx.31660.1.S1_at5/1112+6724378..6726039hypothetical protein
LOC_Os12g12260Os.51035.1.S1_at11/1112+6728591..6733242Diacylglycerol kinase 1, putative, expressed
LOC_Os12g12260OsAffx.31710.1.S1_x_at10/1112+6728591..6733242Diacylglycerol kinase 1, putative, expressed
LOC_Os12g12270Os.20602.2.S1_x_at11/1112+6734459..6736639hAT family dimerisation domain containing protein
LOC_Os12g12280OsAffx.10645.1.S1_at2/1112+6743433..6743750hypothetical protein
LOC_Os12g12290OsAffx.31713.1.S1_at11/1112+6753995..6755660Exostosin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007205biological_processprotein kinase C activation
GO:0009409biological_processresponse to cold
GO:0009611biological_processresponse to wounding
GO:0048364biological_processroot development
GO:0048366biological_processleaf development
GO:0004143molecular_functiondiacylglycerol kinase activity
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51035.1.S1_at--39--2571Chr12:6729159..6729183 (25 bp)
AACTGACGATGTCTTGCTCTTGTGC
LOC_Os12g12260
Os.51035.1.S1_at--199--4831Chr12:6729144..6729168 (25 bp)
GCTCTTGTGCTCAGATGTTCATGTT
LOC_Os12g12260
Os.51035.1.S1_at--783--2971Chr12:6729046..6729070 (25 bp)
AATGGTGTGATTGATGCTGCTCAGA
LOC_Os12g12260
Os.51035.1.S1_at--499--6051Chr12:6729020..6729044 (25 bp)
GAGATTGCTCCTTCATGAGATCGCA
LOC_Os12g12260
Os.51035.1.S1_at--1124--691Chr12:6729006..6729030 (25 bp)
ATGAGATCGCACTACGTTTGTCCTC
LOC_Os12g12260
Os.51035.1.S1_at--567--9871Chr12:6728951..6728975 (25 bp)
TACTCGCCGTACTAATGCTGATACC
LOC_Os12g12260
Os.51035.1.S1_at--11--1271Chr12:6728843..6728867 (25 bp)
AGATTTCCTGTTTTCATGATTTGAC
LOC_Os12g12260
Os.51035.1.S1_at--248--3331Chr12:6728792..6728816 (25 bp)
CACTAGGTGATCTGCTTCTTTGTTT
LOC_Os12g12260
Os.51035.1.S1_at--744--6811Chr12:6728771..6728795 (25 bp)
GTTTACTGGGCTGTGGGCTCATCAA
LOC_Os12g12260
Os.51035.1.S1_at--269--7371Chr12:6728745..6728769 (25 bp)
GTGAGTATTCACCAGTTTACGAAGA
LOC_Os12g12260
Os.51035.1.S1_at--810--3331Chr12:6728701..6728725 (25 bp)
CACTGTTACTGCATGTAGGGTTCAA
LOC_Os12g12260
Target Sequence 
AACTGACGATGTCTTGCTCTTGTGCTCAGATGTTCATGTTGAGGAGGACATCCGAAGAACCCACCGGGCATGCCGCTGCT
ATCATGAGCGAGGTCCTCATGAATGCAGAGTGCAATGGTGTGATTGATGCTGCTCAGAAGAGATTGCTCCTTCATGAGAT
CGCACTACGTTTGTCCTCCTGACAGTCCAGCCCGTCCCCTCCATCTCTTACTCGCCGTACTAATGCTGATACCGAATCCA
NNCCCTTTTGTGTTGAGAAGTTCCCNTTGNCACAGGTGNAGAAAGGNCATACGGTAGGATGTTACACAGAGGAAATAGAA
GATTTCCTGTTTTCATGATTTGACGTATACATACATAGATTACCTTTTCACACTAGGTGATCTGCTTCTTTGTTTACTGG
GCTGTGGGCTCATCAAGGTGAGTATTCACCAGTTTACGAAGAGTTTTNTAGCGCGTAGAAACACTGTTACTGCATGTAGG
GTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis