Browse Element(s) Details


Os.51056.1.S1_at

Description gb:AK060391.1
DB_XREF= gi:32970409
TID=Os.51056.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51056 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-010-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A02, full insert sequence.
FL= gb:AK060391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1439011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14350Os.14491.2.S1_x_at3/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350Os.47463.1.S1_x_at1/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350OsAffx.20057.1.S1_at1/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14360OsAffx.7107.1.S1_at11/1111+8058529..8060562Zinc knuckle family protein
LOC_Os11g14370OsAffx.20973.1.S1_at1/1111+8064348..8066349hypothetical protein
LOC_Os11g14380Os.48915.1.S1_at10/1111+8067905..8073534NB-ARC domain containing protein, expressed
LOC_Os11g14380Os.55130.1.S1_at1/1111+8067905..8073534NB-ARC domain containing protein, expressed
LOC_Os11g14390Os.51056.1.S1_at11/1111+8078330..8080286expressed protein
LOC_Os11g14400OsAffx.18846.1.S1_at11/1111+8080444..8081983Polygalacturonase family protein, expressed
LOC_Os11g14410Os.56125.1.S1_at11/1111+8085613..8087684Polygalacturonase precursor, putative, expressed
LOC_Os11g14420Os.22882.1.S1_at9/1111+8091330..8095052Protein kinase domain containing protein, expressed
LOC_Os11g14430Os.8330.2.S1_a_at11/1111+8096199..8100783RNA recognition motif family protein, expressed
LOC_Os11g14430Os.8330.1.S1_x_at11/1111+8096199..8100783RNA recognition motif family protein, expressed
LOC_Os11g14440Os.50133.1.S1_at11/1111+8101334..8102798expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51056.1.S1_at--752--10691Chr11:8078896..8078920 (25 bp)
TTGCCATGGCAACCCTGCAATGGAT
LOC_Os11g14390
Os.51056.1.S1_at--625--2771Chr11:8078761..8078785 (25 bp)
AAGAGCGAAGTCCACGACGTTGCAA
LOC_Os11g14390
Os.51056.1.S1_at--925--1431Chr11:8078685..8078709 (25 bp)
AGAAGCCCCTTAGCAGACATGACTA
LOC_Os11g14390
Os.51056.1.S1_at--949--5331Chr11:8078652..8078676 (25 bp)
GAAGTAGCAGCTGCTCCAACAACGA
LOC_Os11g14390
Os.51056.1.S1_at--592--2191Chr11:8078634..8078658 (25 bp)
ACAACGACAGAGATCCGCGGTAAAT
LOC_Os11g14390
Os.51056.1.S1_at--578--3971Chr11:8078617..8078641 (25 bp)
CGGTAAATGGAAGTGCCCTCGCAAA
LOC_Os11g14390
Os.51056.1.S1_at--616--5111Chr11:8078587..8078611 (25 bp)
GCACTATGTTGGTCCTCCGTTGAAA
LOC_Os11g14390
Os.51056.1.S1_at--547--2971Chr11:8078546..8078570 (25 bp)
AATGGTTGCGCCGACTGGATTGAAG
LOC_Os11g14390
Os.51056.1.S1_at--159--6511Chr11:8078469..8078493 (25 bp)
GATTTGGTGCCATGTTTTCAGGTTT
LOC_Os11g14390
Os.51056.1.S1_at--305--6871Chr11:8078443..8078467 (25 bp)
GTGTTTTTACCCAGCCTGTTGTACG
LOC_Os11g14390
Os.51056.1.S1_at--1144--2451Chr11:8078388..8078412 (25 bp)
AACACTATATGCCTGCTTCTATGGT
LOC_Os11g14390
Target Sequence 
TTGCCATGGCAACCCTGCAATGGATGACAAAGAGCAGGAAGAAACAGTTGCAGCTGATGGTTTTGTTGCCATCAAGAGAA
AGGAGAAACTAGAACAAACATTCAACACAAACAAAATTCCTAAGCCCCCAACGAGAAGAGCGAAGTCCACGACGTTGCAA
GAGAACCGTGACATTGTGGAACAGAAAGTCGTAGTCCAAGAACGCACTAGCAGAAGCCCCTTAGCAGACATGACTAATGT
TTCAGAAGTAGCAGCTGCTCCAACAACGACAGAGATCCGCGGTAAATGGAAGTGCCCTCGCAAAGGGAAGCACTATGTTG
GTCCTCCGTTGAAACAGCAGCGTTTGGGGCAATGGTTGCGCCGACTGGATTGAAGCATATGCATTGTTCAGGTTGAAGCA
ATTTTTCCTTTTGTATTGGCAACTGGTGATTTGGTGCCATGTTTTCAGGTTTGGTGTTTTTACCCAGCCTGTTGTACGAG
TGCATGCCACTATATATGTCAGGCAGAAAACACTATATGCCTGCTTCTATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis