Browse Element(s) Details


Os.51164.1.S1_at

Description gb:AK061245.1
DB_XREF= gi:32971263
TID=Os.51164.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51164 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033014J17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-D09, full insert sequence.
FL= gb:AK061245.1 gb:AK099327.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4068011/11Mis12 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40650OsAffx.2931.1.S1_at11/112+24637524..24638189hypothetical protein
LOC_Os02g40664Os.18434.1.S1_at11/112+24639637..24645322zinc finger family protein, putative, expressed
LOC_Os02g40664OsAffx.24666.1.S1_at9/112+24639637..24645322zinc finger family protein, putative, expressed
LOC_Os02g40680Os.51164.1.S1_at11/112+24661382..24664923Mis12 protein, expressed
LOC_Os02g40690NANA2+24665535..24665747hypothetical protein
LOC_Os02g40700Os.37865.1.S1_at11/112+24670494..24671465enzyme of the cupin superfamily, putative, expressed
LOC_Os02g40710OsAffx.12433.1.S1_at11/112+24677764..24679336Ammonium transporter 1, member 1, putative, expressed
LOC_Os02g40720OsAffx.12434.1.S1_at11/112+24680916..24681711hypothetical protein
LOC_Os02g40730Os.9328.1.S1_at11/112+24685015..24686867Ammonium transporter 1, member 2, putative, expressed
LOC_Os02g40739NANA2+24688772..24688971NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51164.1.S1_at--580--2251Chr02:24663654..24663678 (25 bp)
AAATTTGGATTCCTCTATGGCTGAA
LOC_Os02g40680
Os.51164.1.S1_at--128--5411Chr02:24664409..24664433 (25 bp)
GAACGTAATACCACTATTTCAGCGG
LOC_Os02g40680
Os.51164.1.S1_at--542--6771Chr02:24664514..24664635 (25 bp)
GTTAGCATCAGGTTTCACTGCCAGA
LOC_Os02g40680
Os.51164.1.S1_at--733--151Chr02:24664676..24664700 (25 bp)
ATTAGTAGCTCCCACTTTTATGCGA
LOC_Os02g40680
Os.51164.1.S1_at--320--2051Chr02:24664689..24664713 (25 bp)
ACTTTTATGCGACCTGTGCGATAAC
LOC_Os02g40680
Os.51164.1.S1_at--936--2491Chr02:24664711..24664735 (25 bp)
AACAGGACGCCTGCTATGTGCTATC
LOC_Os02g40680
Os.51164.1.S1_at--1085--9071Chr02:24664729..24664753 (25 bp)
TGCTATCCTTCGTAGCACGGGATAA
LOC_Os02g40680
Os.51164.1.S1_at--1029--7871Chr02:24664757..24664781 (25 bp)
GGTTATATGTTTGGACTCTTGCTAA
LOC_Os02g40680
Os.51164.1.S1_at--291--9571Chr02:24664773..24664797 (25 bp)
TCTTGCTAACTGAGTACCGCCAATG
LOC_Os02g40680
Os.51164.1.S1_at--1066--8731Chr02:24664809..24664833 (25 bp)
TGTAATCCTGAACTGCGATTCCTTC
LOC_Os02g40680
Os.51164.1.S1_at--1055--9911Chr02:24664886..24664910 (25 bp)
TACGTGGTTATTTCTCCGGATGGCC
LOC_Os02g40680
Target Sequence 
AAATTTGGATTCCTCTATGGCTGAATTATTGAAGGTGTTTGAAAGCAAGGCNTTTCAAGACAATTTTCAAGATCTTGTGA
ACGTAATACCACTATTTCAGCGGAAACTGGAAGGTATGAAAAGGAAGATTGTTGAGAACATTGACGATCAAATTGATTGG
AACGTCAATGGACACCACAANCGGTTAGCATCAGGTTTCACTGCCAGAACAGAAGACAGTCAAGATGTTGTGAATGTCTT
AAAGAAGTATTAGTAGCTCCCACTTTTATGCGACCTGTGCGATAACAGGACGCCTGCTATGTGCTATCCTTCGTAGCACG
GGATAAGCTGGTTATATGTTTGGACTCTTGCTAACTGAGTACCGCCAATGCAGATCTTCAATGTAATCCTGAACTGCGAT
TCCTTCCGAACAATTTGTACGTAAACGTAANGTACANTGGGCTTTCCATAATTGGTTTATACGTGGTTATTTCTCCGGAT
GGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis