Browse Element(s) Details


Os.51190.1.S1_at

Description gb:AK105970.1
DB_XREF= gi:32991179
TID=Os.51190.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51190 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-E12, full insert sequence.
FL= gb:AK105970.1 gb:AK061461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0923011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09200OsAffx.25025.1.S1_at11/113+4771980..4777732expressed protein
LOC_Os03g09210Os.22368.1.S1_at11/113+4787046..4789938GRIM-19 protein, expressed
LOC_Os03g09210OsAffx.25026.1.S1_at10/113+4787046..4789938GRIM-19 protein, expressed
LOC_Os03g09220Os.7974.2.S1_at11/113+4794581..4799510Protein phosphatase 2C containing protein, expressed
LOC_Os03g09230Os.51190.1.S1_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g09230OsAffx.25027.1.S1_s_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g09250Os.10937.1.S1_at10/113+4804749..4808864Inositol-3-phosphate synthase, putative, expressed
LOC_Os03g09260Os.56967.1.S1_s_at10/113+4815259..4817300ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09260Os.56967.1.S1_at8/113+4815259..4817300ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09270Os.54409.1.S1_at11/113+4821393..4823472ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09270OsAffx.12801.1.S1_s_at11/113+4821393..4823472ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09280Os.5252.1.S1_at11/113+4826358..4832948Chitin-inducible gibberellin-responsive protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51190.1.S1_at--937--10611Chr03:4800111..4800135 (25 bp)
TTCGGCATCGCCTGCTGGGACAGGA
LOC_Os03g09230
Os.51190.1.S1_at--149--9131Chr03:4800099..4800123 (25 bp)
TGCTGGGACAGGAAGCGACTCCGCC
LOC_Os03g09230
Os.51190.1.S1_at--235--4451Chr03:4800008..4800032 (25 bp)
GCCTTGTTCTCTGCCGCTGTAATCG
LOC_Os03g09230
Os.51190.1.S1_at--494--4591Chr03:4799966..4799990 (25 bp)
GCGCACCGTGCCTAGTTAGGCTTTG
LOC_Os03g09230
Os.51190.1.S1_at--825--10431Chr03:4799951..4799975 (25 bp)
TTAGGCTTTGGCCTGCACGGGTCCA
LOC_Os03g09230
Os.51190.1.S1_at--455--1871Chr03:4799922..4799946 (25 bp)
ACGAGCGTGTCGTTGCAGTTGTTGA
LOC_Os03g09230
Os.51190.1.S1_at--514--6671Chr03:4799911..4799935 (25 bp)
GTTGCAGTTGTTGACTTGTGTGTTT
LOC_Os03g09230
Os.51190.1.S1_at--585--10291Chr03:4799854..4799878 (25 bp)
TTTCCCTCCATATTACTACACACTT
LOC_Os03g09230
Os.51190.1.S1_at--737--2011Chr03:4799840..4799864 (25 bp)
ACTACACACTTAAACCAGCATTTTT
LOC_Os03g09230
Os.51190.1.S1_at--698--3391Chr03:4799825..4799849 (25 bp)
CAGCATTTTTTACGTTCATGACAAA
LOC_Os03g09230
Os.51190.1.S1_at--645--10431Chr03:4799816..4799840 (25 bp)
TTACGTTCATGACAAAGGTTCTCAC
LOC_Os03g09230
Target Sequence 
TTCGGCATCGCCTGCTGGGACAGGAAGCGACTCCGCCGCCGCCACCGTAAGAGCTCCGGCCCCATCGCCGTCGGCTGCTG
TCCGGCCCAAGGAGACAAAGGCGGCCTTGTTCTCTGCCGCTGTAATCGCCGCCGCTACTCTGCTCGCGCACCGTGCCTAG
TTAGGCTTTGGCCTGCACGGGTCCATCCAACGAGCGTGTCGTTGCAGTTGTTGACTTGTGTGTTTGCATATGTACCGAGA
TGTATCTTGTGAGAGTTTTTCCCTCCATATTACTACACACTTAAACCAGCATTTTTTACGTTCATGACAAAGGTTCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis