Browse Element(s) Details


Os.51215.2.S1_at

Description gb:AK100518.1
DB_XREF= gi:32985727
TID=Os.51215.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023100H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100H08, full insert sequence.
FL= gb:AK100518.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0581211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05780Os.11459.1.S1_at11/113+2862160..2867033AMP-binding enzyme family protein, expressed
LOC_Os03g05790Os.38395.3.S1_x_at11/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.2.S1_x_at9/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.4.S1_x_at7/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.1.S1_at1/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05800Os.56167.1.S1_at11/113+2876588..2879385expressed protein
LOC_Os03g05806Os.48438.1.S1_at11/113+2880707..2885725RNA pseudouridylate synthase family protein, expressed
LOC_Os03g05812Os.51215.2.S1_x_at11/113+2886226..2891769expressed protein
LOC_Os03g05812Os.51215.2.S1_at11/113+2886226..2891769expressed protein
LOC_Os03g05812Os.51215.1.S1_at11/113+2886226..2891769expressed protein
LOC_Os03g05820OsAffx.24985.1.S1_at11/113+2893131..2901824Kinesin motor domain containing protein, expressed
LOC_Os03g05830Os.17992.1.A1_at11/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05830Os.17992.2.S1_at10/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05830OsAffx.22176.2.S1_at1/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05840NANA3+2913950..2916401monooxygenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51215.2.S1_at--593--2311Chr03:2890938..2890962 (25 bp)
AAAGGTATACTTTTTCTTGCAAGCA
LOC_Os03g05812
Os.51215.2.S1_at--637--6892Chr11:10759813..10759842 (23 bp)
GTATACTTTTTCTTGCAAGCATAGT
NONE
Os.51215.2.S1_at--1118--9571Chr03:2890952..2890976 (25 bp)
TCTTGCAAGCATAGTAAAAACACAG
LOC_Os03g05812
Os.51215.2.S1_at--718--1091Chr03:2890994..2891018 (25 bp)
AGTGGCATTGGAGGAACACTTTTTT
LOC_Os03g05812
Os.51215.2.S1_at--959--10351Chr03:2891017..2891041 (25 bp)
TTTTTTAACAATCTGTCACAATGTG
LOC_Os03g05812
Os.51215.2.S1_at--1030--8731Chr03:2891030..2891054 (25 bp)
TGTCACAATGTGAATATCCTAGATT
LOC_Os03g05812
Os.51215.2.S1_at--881--771Chr03:2891037..2891061 (25 bp)
ATGTGAATATCCTAGATTCCTTAGG
LOC_Os03g05812
Os.51215.2.S1_at--614--1231Chr03:2891050..2891074 (25 bp)
AGATTCCTTAGGATGTTGACATATA
LOC_Os03g05812
Os.51215.2.S1_at--638--5671Chr03:2891067..2891091 (25 bp)
GACATATAATTATTTCCTGTTGGAA
LOC_Os03g05812
Os.51215.2.S1_at--272--10291Chr03:2891079..2891103 (25 bp)
TTTCCTGTTGGAATTGATTGTAAAA
LOC_Os03g05812
Os.51215.2.S1_at--622--8511Chr03:2891129..2891153 (25 bp)
TGGAATTTATTCCATGTTTCCTGCT
LOC_Os03g05812
Target Sequence 
AAAGGTATACTTTTTCTTGCAAGCATAGTAAAAACACAGAGAAAGAAAAACAAATTAGTGGCATTGGAGGAACACTTTTT
TTTTTAACAATCTGTCACAATGTGAATATCCTAGATTCCTTAGGATGTTGACATATAATTATTTCCTGTTGGAATTGATT
GTAAAAAAAGAAAGAAGTATGTAGACTATAGTGGAATTTATTCCATGTTTCCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51215.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis