Browse Element(s) Details


Os.51311.1.S1_at

Description gb:AK062504.1
DB_XREF= gi:32972522
TID=Os.51311.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51311 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-B05, full insert sequence.
FL= gb:AK062504.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g394001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39360OsAffx.28005.1.S1_at11/116+23354098..23360598NB-ARC domain containing protein
LOC_Os06g39360Os.53902.1.S1_x_at1/116+23354098..23360598NB-ARC domain containing protein
LOC_Os06g39370Os.8945.1.S1_at11/116+23366379..23367832Kelch motif family protein, expressed
LOC_Os06g39380OsAffx.15840.1.S1_at10/116+23371312..23372382hypothetical protein
LOC_Os06g39390OsAffx.28006.1.S1_at11/116+23378161..23380411Transferase family protein, expressed
LOC_Os06g39400OsAffx.31727.1.S1_at6/116+23381208..23387390retrotransposon protein, putative, unclassified
LOC_Os06g39400OsAffx.27238.1.S1_at1/116+23381208..23387390retrotransposon protein, putative, unclassified
LOC_Os06g39400Os.51311.1.S1_at1/116+23381208..23387390retrotransposon protein, putative, unclassified
LOC_Os06g39410Os.46578.1.S1_at3/116+23400153..23400370hypothetical protein
LOC_Os06g39410Os.46578.1.S1_x_at2/116+23400153..23400370hypothetical protein
LOC_Os06g39420OsAffx.10967.5.S1_x_at10/116+23404705..23406362hypothetical protein
LOC_Os06g39420OsAffx.10967.5.S1_at10/116+23404705..23406362hypothetical protein
LOC_Os06g39430OsAffx.5062.1.S1_at11/116+23408358..23409028hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51311.1.S1_at--637--6931Chr04:229410..229434 (25 bp)
GTAGAGCCAGTACCGCAGTAAACCA
NONE
Os.51311.1.S1_at--542--1171Chr04:229426..229450 (25 bp)
AGTAAACCATGCCTGCGTCTGCCTG
NONE
Os.51311.1.S1_at--395--7251Chr04:229496..229664 (25 bp)
GTCCCCGATCTGGATCTGTATGTAT
NONE
Os.51311.1.S1_at--952--3871Chr04:229655..229679 (25 bp)
CTGTATGTATACACGCGAGCTGCGG
NONE
Os.51311.1.S1_at--663--8052Chr04:229679..229703 (25 bp)
GGAGATCCGGATCGCATGCACTAAA
NONE
Os.51311.1.S1_at--404--6391Chr04:229688..229712 (25 bp)
GATCGCATGCACTAAATTCACTGAA
NONE
Os.51311.1.S1_at--952--6731Chr04:229772..229796 (25 bp)
GTTCATTTTGTATCTTCAGTCCTGG
NONE
Os.51311.1.S1_at--182--10531Chr04:229786..229810 (25 bp)
TTCAGTCCTGGATTTCTCTTGTTAA
NONE
Os.51311.1.S1_at--927--7931Chr04:229795..229819 (25 bp)
GGATTTCTCTTGTTAAGCTCCATCT
NONE
Os.51311.1.S1_at--799--2691Chr04:229809..229833 (25 bp)
AAGCTCCATCTTATCAATGTTGGTA
NONE
Os.51311.1.S1_at--915--10111Chr04:229859..229883 (25 bp)
TATGACAAGCTCTACTTTACAGTTC
NONE
Target Sequence 
GTAGAGCCAGTACCGCAGTAAACCATGCCTGCGTCTGCCTGCCTCCTCTTCCAATTTTTCCTCCCCGGATGCGAATCTCC
TATCCCGTCCCCGATCTGGATCTGTATGTATACACGCGAGCTGCGGGAGATCCGGATCGCATGCACTAAATTCACTGAAA
TCACCGCAGTGAGTTAAGTATATACTCCACCTAATAACGAAATGCACTTGAGTAAATCGTTCATTTTGTATCTTCAGTCC
TGGATTTCTCTTGTTAAGCTCCATCTTATCAATGTTGGTAGAATGGTGATCCATGGGATAATTATTATGACAAGCTCTAC
TTTACAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis