Browse Element(s) Details


Os.51355.1.S1_at

Description gb:AK062631.1
DB_XREF= gi:32972649
TID=Os.51355.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-C09, full insert sequence.
FL= gb:AK062631.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5062411/11hAT family dimerisation domain containing protein, expressed
LOC_Os03g250702/11CDPK-related protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50570Os.53101.1.S1_at10/115+28912701..28914261Serine carboxypeptidase family protein, expressed
LOC_Os05g50580Os.56284.1.S1_at11/115+28916940..28918772Serine carboxypeptidase family protein, expressed
LOC_Os05g50590OsAffx.15183.1.S1_at10/115+28918822..28919562hypothetical protein
LOC_Os05g50600Os.27648.1.S1_at11/115+28920855..28922556Serine carboxypeptidase family protein, expressed
LOC_Os05g50600Os.45963.1.S1_x_at1/115+28920855..28922556Serine carboxypeptidase family protein, expressed
LOC_Os05g50610Os.29987.2.S1_at11/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.29987.1.S1_at11/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.43567.1.S1_x_at5/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.53217.1.S1_x_at4/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.38172.1.S1_x_at2/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50624Os.51355.1.S1_at11/115+28938490..28940826hAT family dimerisation domain containing protein, expressed
LOC_Os05g50624Os.7726.1.S1_at9/115+28938490..28940826hAT family dimerisation domain containing protein, expressed
LOC_Os05g50640Os.54158.1.S1_at11/115+28945595..28949500hAT family dimerisation domain containing protein, expressed
LOC_Os05g50650Os.36306.2.S1_x_at2/115+28950692..28952249retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50660Os.48043.1.S2_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.48043.1.S1_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.22458.1.S1_s_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50670OsAffx.4678.1.S1_at11/115+28963570..28963788hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0004723molecular_functioncalcium-dependent protein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51355.1.S1_at--803--291Chr05:28940400..28940424 (25 bp)
ATAGCTAAGGCAGCGTCGACACCTG
LOC_Os05g50624
Os.51355.1.S1_at--262--4111Chr05:28940416..28940440 (25 bp)
CGACACCTGCGTGCGGCTGGTTCAA
LOC_Os05g50624
Os.51355.1.S1_at--645--8412Chr05:28940443..28940467 (25 bp)
GGCCGTAGCCGAACGAGGCGTCCAT
LOC_Os05g50624
Os.51355.1.S1_at--147--4271Chr05:28940485..28940509 (25 bp)
CCGGCATGGCGCTGGACAATGGACA
LOC_Os05g50624
Os.51355.1.S1_at--107--2231Chr05:28940546..28940570 (25 bp)
ACAAGTTTGGTTACACCTGCGCTGC
LOC_Os05g50624
Os.51355.1.S1_at--825--4411Chr05:28940613..28940637 (25 bp)
GCCTTCAAGGTCAATCCAATCCCTT
LOC_Os05g50624
Os.51355.1.S1_at--512--10311Chr05:28940639..28940663 (25 bp)
TTTCTGTCCAGTTCACGACTTGTTC
LOC_Os05g50624
Os.51355.1.S1_at--154--10591Chr05:28940661..28940685 (25 bp)
TTCTCCTTCGCTGAGGTTTTGAGTC
LOC_Os05g50624
Os.51355.1.S1_at--806--2473Chr05:28940726..28940750 (25 bp)
AACACTTAAATCTTCTCCTGCATTG
LOC_Os05g50624
Os.51355.1.S1_at--991--431Chr05:28940735..28940759 (25 bp)
ATCTTCTCCTGCATTGTTTAGTGTT
LOC_Os05g50624
Os.51355.1.S1_at--334--10071Chr05:28940753..28940777 (25 bp)
TAGTGTTTACACCTGATTGAATTCA
LOC_Os05g50624
Target Sequence 
ATAGCTAAGGCAGCGTCGACACCTGCGTGCGGCTGGTTCAAGCGGCCGTAGCCGAACGAGGCGTCCATCCCTGAGTCCGG
CGAGCCCGGCATGGCGCTGGACAATGGACAAGAGCTTCGGCTTCTCCAAGCACTTCGCCGCCAAGTACAAGTTTGGTTAC
ACCTGCGCTGCCACCTGCAGAAGGGCGAGTTCAAGGGCGACGACGGTGACGTCGCCTTCAAGGTCAATCCAATCCCTTCT
TTCTGTCCAGTTCACGACTTGTTCTCCTTCGCTGAGGTTTTGAGTCAATTTTCATGTTTATTTTCCTCGCTTGGGTTTAA
TTAATTAACACTTAAATCTTCTCCTGCATTGTTTAGTGTTTACACCTGATTGAATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis