Browse Element(s) Details


Os.51361.1.S1_at

Description gb:AK062638.1
DB_XREF= gi:32972656
TID=Os.51361.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51361 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-D05, full insert sequence.
FL= gb:AK062638.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4289010/11Cytochrome b561 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42860Os.14249.1.S1_a_at11/112+25761430..25768571ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os02g42870Os.55708.1.A1_at11/112+25772210..25774926Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g42880Os.54449.1.S1_at11/112+25783370..25785344Remorin, C-terminal region family protein, expressed
LOC_Os02g42890OsAffx.24693.1.S1_at11/112+25791428..25794151Cytochrome b561 family protein, expressed
LOC_Os02g42890Os.51361.1.S1_at10/112+25791428..25794151Cytochrome b561 family protein, expressed
LOC_Os02g42900OsAffx.2945.1.S1_at11/112+25797244..25797987hypothetical protein
LOC_Os02g42910OsAffx.12465.1.S1_at11/112+25800084..25807541expressed protein
LOC_Os02g42920Os.55694.1.S1_at11/112+25810059..25814987expressed protein
LOC_Os02g42920OsAffx.24694.1.S1_x_at11/112+25810059..25814987expressed protein
LOC_Os02g42930OsAffx.2946.1.S1_at11/112+25817855..25818280hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0016021cellular_componentintegral to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0008805molecular_functioncarbon-monoxide oxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51361.1.S1_at--202--5471Chr02:25791643..25791667 (25 bp)
GAACATCTGTAGTTTACAACTTTAC
LOC_Os02g42890
Os.51361.1.S1_at--854--4932Chr04:14201195..14201216 (22 bp)
GCATATACAAACACAACCAAAGAAG
NONE
Os.51361.1.S1_at--646--8811Chr02:25791590..25791614 (25 bp)
TGTTGTTGCCACAGTGAGACCTGGT
LOC_Os02g42890
Os.51361.1.S1_at--308--7491Chr02:25791567..25791591 (25 bp)
GTGGCTGGTGTTCATATAACTCCCC
LOC_Os02g42890
Os.51361.1.S1_at--637--7751Chr02:25791561..25791585 (25 bp)
GGTGTTCATATAACTCCCCTTGAAA
LOC_Os02g42890
Os.51361.1.S1_at--379--3571Chr02:25791555..25791579 (25 bp)
CATATAACTCCCCTTGAAACAAAGA
LOC_Os02g42890
Os.51361.1.S1_at--116--5571Chr02:25791532..25791556 (25 bp)
GAAAGAACATACTGGACATACAAAG
LOC_Os02g42890
Os.51361.1.S1_at--1067--7471Chr02:25791485..25791509 (25 bp)
GTGTGTGTATTTGTTATGTGGTTAA
LOC_Os02g42890
Os.51361.1.S1_at--521--131Chr02:25791455..25791479 (25 bp)
ATTAATATAGAAGGCGTCGGACGTG
LOC_Os02g42890
Os.51361.1.S1_at--710--851Chr02:25791444..25791468 (25 bp)
AGGCGTCGGACGTGTCACTACCGTC
LOC_Os02g42890
Os.51361.1.S1_at--399--2031Chr02:25791428..25791452 (25 bp)
ACTACCGTCCATGCCATGTTCGTGT
NONE
Target Sequence 
GAACATCTGTAGTTTACAACTTTACAGCATATACAAACACAACCAAAGAAGTTTGTTGTTGCCACAGTGAGACCTGGTGG
CTGGTGTTCATATAACTCCCCTTGAAACAAAGAAAGAACATACTGGACATACAAAGAAAGGAAATATGCATATTTGTTGT
GTGTGTATTTGTTATGTGGTTAATCTATATTAATATAGAAGGCGTCGGACGTGTCACTACCGTCCATGCCATGTTCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis