Browse Element(s) Details


Os.51374.1.S1_at

Description gb:AK062669.1
DB_XREF= gi:32972687
TID=Os.51374.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G02, full insert sequence.
FL= gb:AK062669.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3041010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30370Os.35344.18.S1_x_at11/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30370Os.35344.3.S1_x_at9/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30370OsAffx.22940.5.S1_x_at3/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30380Os.47322.1.A1_at11/119+18490725..18493878expressed protein
LOC_Os09g30390OsAffx.6452.1.S1_at11/119+18494825..18495403hypothetical protein
LOC_Os09g30400Os.20028.1.S1_at11/119+18495951..18500217WRKY DNA binding domain containing protein, expressed
LOC_Os09g30410Os.51374.1.S1_at10/119+18507898..18509774expressed protein
LOC_Os09g30414OsAffx.6453.1.S1_at11/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414Os.11197.2.S1_x_at11/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414OsAffx.14464.1.S1_x_at1/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30418Os.28300.2.S2_s_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.28300.2.S1_a_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.28300.2.S2_a_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.22573.1.S1_x_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.57460.1.S1_x_at8/119+18523286..18528649Hsp90 protein
LOC_Os09g30434Os.11197.2.S1_x_at5/119+18532125..18534298Eukaryotic aspartyl protease family protein
LOC_Os09g30434OsAffx.14464.1.S1_x_at1/119+18532125..18534298Eukaryotic aspartyl protease family protein
LOC_Os09g30438Os.28300.2.S2_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.22573.1.S1_x_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S2_s_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S1_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.57460.1.S1_x_at8/119+18534745..18540200Heat shock protein 82, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51374.1.S1_at--900--4671Chr09:18509129..18509153 (25 bp)
GCGGATCGGCAACTACCTCAAGAAC
LOC_Os09g30410
Os.51374.1.S1_at--525--1551Chr09:18508815..18508839 (25 bp)
AGCTTGATGATAGCCCTGCAGCCTT
LOC_Os09g30410
Os.51374.1.S1_at--781--1671NONE
AGCCTTCTGAGTGGCATTCACCAGT
NONE
Os.51374.1.S1_at--345--2851Chr09:18508167..18508191 (25 bp)
AAGTCTGCTGGAATGCACTATCCTA
LOC_Os09g30410
Os.51374.1.S1_at--383--9891Chr09:18508144..18508168 (25 bp)
TACATTCCTACCTTACTTTTCTGGT
LOC_Os09g30410
Os.51374.1.S1_at--284--2051Chr09:18508130..18508154 (25 bp)
ACTTTTCTGGTCAACATCGCACAAA
LOC_Os09g30410
Os.51374.1.S1_at--471--9491Chr09:18508097..18508121 (25 bp)
TCTCCAATTCCCCTACATTTTGATT
LOC_Os09g30410
Os.51374.1.S1_at--368--10191Chr09:18508043..18508067 (25 bp)
TATTTTACTAGCACTCACGAGTCGC
LOC_Os09g30410
Os.51374.1.S1_at--217--6071Chr09:18508003..18508027 (25 bp)
GTACTGACGGGACCTACTTACGGAG
LOC_Os09g30410
Os.51374.1.S1_at--271--151Chr09:18507972..18507996 (25 bp)
ATTAGACGCTTTTCCTGATTCTGAG
LOC_Os09g30410
Os.51374.1.S1_at--1029--2991Chr09:18507899..18507923 (25 bp)
AATGATGTGCTGCTATTCTGAGTAC
LOC_Os09g30410
Target Sequence 
GCGGATCGGCAACTACCTCAAGAACCGCATCCCGGAAATCTTGGAAGTGGAGATAGAAGATGAGAAGCAGCTTGATGATA
GCCCTGCAGCCTTCTGAGTGGCATTCACCAGTCAATGGCTCCCTCCAATGCACATTGCACAAACCTGAATTTCTGANGTT
AAGCTGAAGAACCAAGTCTGCTGGAATGCACTATCCTACATTCCTACCTTACTTTTCTGGTCAACATCGCACAAATTCAG
GGATCTCCAATTCCCCTACATTTTGATTGTGGAGATGCGTATGATTTGAGACTATTCTATTTTACTAGCACTCACGAGTC
GCAAGAACCTGAAAACTGTACTGACGGGACCTACTTACGGAGAGGTTTATTAGACGCTTTTCCTGATTCTGAGCTTGTTG
GTATCACCTTTATGTGTATTTATTTAAAAAAAGGGTGTAGCAATGATGTGCTGCTATTCTGAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis