Browse Element(s) Details


Os.51389.1.S1_at

Description gb:AK103124.1
DB_XREF= gi:32988333
TID=Os.51389.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51389 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033119L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033119L05, full insert sequence.
FL= gb:AK103124.1 gb:AK062692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0267011/11Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g026304/11Cytochrome P450 72A1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02620Os.56849.1.S1_at1/1111+826667..830791transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g02630Os.50540.1.S1_at11/1111+836813..838842expressed protein
LOC_Os11g02630Os.17196.1.A1_s_at11/1111+836813..838842expressed protein
LOC_Os11g02640Os.24154.1.A1_at11/1111+844216..847344expressed protein
LOC_Os11g02650OsAffx.24949.3.S1_x_at1/1111+849435..850267fringe protein, putative
LOC_Os11g02650OsAffx.24949.1.S1_x_at1/1111+849435..850267fringe protein, putative
LOC_Os11g02660Os.26742.1.S1_at11/1111+850566..854102hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02670Os.10542.1.S1_s_at11/1111+855479..859981Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g02670Os.51389.1.S1_at11/1111+855479..859981Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g02680NANA11+864498..864962retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02690OsAffx.18640.1.S1_at11/1111+866517..867556hypothetical protein
LOC_Os11g02690OsAffx.29326.1.S1_at1/1111+866517..867556hypothetical protein
LOC_Os11g02700NANA11+870808..874513retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g02710Os.47955.2.S1_x_at6/1111+875097..878084Cytochrome P450 family protein
LOC_Os11g02720Os.27569.3.S1_at4/1111+881111..884565expressed protein
LOC_Os11g02720OsAffx.20484.1.S1_at1/1111+881111..884565expressed protein
LOC_Os11g02720OsAffx.20484.1.S1_x_at1/1111+881111..884565expressed protein
LOC_Os11g02720Os.11988.1.S1_at1/1111+881111..884565expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016567biological_processprotein ubiquitination
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51389.1.S1_at--293--2391Chr11:858381..858405 (25 bp)
AAACTTTCACAGAAGCAAGGCACCA
LOC_Os11g02670
Os.51389.1.S1_at--258--10111Chr11:859379..859400 (22 bp)
TATGGCCCAGTGTTCCTATACTCAA
LOC_Os11g02670
Os.51389.1.S1_at--910--6472Chr12:909445..909469 (25 bp)
GATACTACAAGTTTCTCACCCAGAT
NONE
Os.51389.1.S1_at--428--7732Chr12:909489..909513 (25 bp)
GGTGGACACCATCAGAGCTTGGTAA
NONE
Os.51389.1.S1_at--459--2752Chr12:909527..909551 (25 bp)
AAGAAATCTCGCAAGGCCCTCTTTG
NONE
Os.51389.1.S1_at--321--10732Chr12:909606..909630 (25 bp)
TTGCACCAGAGTTCTTCATGGATAA
NONE
Os.51389.1.S1_at--222--7991Chr11:859722..859746 (25 bp)
GGATGCAACCGTTCCAGTGTTAGAA
LOC_Os11g02670
Os.51389.1.S1_at--700--6552Chr12:909832..909856 (25 bp)
GATTACTTGCGGAACTTGTCAGCAG
LOC_Os12g02630
Os.51389.1.S1_at--153--6272Chr12:909856..909880 (25 bp)
GATGTAATTGCCAGGGCTTGCTTTG
LOC_Os12g02630
Os.51389.1.S1_at--846--4912Chr12:909871..909895 (25 bp)
GCTTGCTTTGGGAGTAGCTTCACAA
LOC_Os12g02630
Os.51389.1.S1_at--786--9392Chr12:909955..909979 (25 bp)
TCGTTTGTTGGTCTGTCTGCACTGT
LOC_Os12g02630
Target Sequence 
AAACTTTCACAGAAGCAAGGCACCAACAACTTCATCTCCACCCTCTTCCCACACTTCCTCCTTTGGCGGGAAACTTATGG
CCCAGTGTTCCTATACTCAACAGGAGCTATGGAGATACTACAAGTTTCTCACCCAGATATGGTGAAGGATATAGGCCGGT
GGACACCATCAGAGCTTGGTAAGCCTAATTATCTAAAGAAATCTCGCAAGGCCCTCTTTGGAGGAGGTTTATTTACAGAG
AATGGTGATGAATGGGCCTATCAGAGGAAGATAATTGCACCAGAGTTCTTCATGGATAAGATTAAGGGTATGATACAGCT
AATTGAGGATGCAACCGTTCCAGTGTTAGAAGCATGGGAGGATATGATTGACGATGAGGGAGGGTGTAGGGAAATAGTTG
TCGATGATTACTTGCGGAACTTGTCAGCAGATGTAATTGCCAGGGCTTGCTTTGGGAGTAGCTTCACAAAAGGAGAAGAA
ATATTTTGCAAGCTTAGGCAGCTCCAAAAAGNAATTGCTCNGCAAGATTCGTTTGTTGGTCTGTCTGCACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis