Browse Element(s) Details


Os.5141.1.S1_at

Description gb:AK063164.1
DB_XREF= gi:32973182
TID=Os.5141.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5141 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H02, full insert sequence.
FL= gb:AK063164.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g406401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40610NANA7+24328754..24334910retrotransposon protein, putative, unclassified
LOC_Os07g40620Os.11328.1.S1_at11/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40620OsAffx.28164.2.S1_at1/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40620Os.46481.2.S1_x_at1/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40620Os.27137.1.S1_at1/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40630Os.27488.1.S1_at10/117+24346204..24350141leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g40630OsAffx.11967.1.S1_x_at1/117+24346204..24350141leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g40640OsAffx.16657.1.S1_at6/117+24354024..24355293expressed protein
LOC_Os07g40640Os.5141.1.S1_at1/117+24354024..24355293expressed protein
LOC_Os07g40640OsAffx.7500.1.S1_at1/117+24354024..24355293expressed protein
LOC_Os07g40650Os.35344.18.S1_x_at11/117+24360821..24366869transposon protein, putative, Mutator sub-class
LOC_Os07g40650Os.35344.3.S1_x_at9/117+24360821..24366869transposon protein, putative, Mutator sub-class
LOC_Os07g40650OsAffx.22940.5.S1_x_at3/117+24360821..24366869transposon protein, putative, Mutator sub-class
LOC_Os07g40660NANA7+24368962..24369348D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain containing protein
LOC_Os07g40670Os.29856.2.S1_x_at1/117+24371576..24372343hypothetical protein
LOC_Os07g40680NANA7+24375158..24376371retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5141.1.S1_at--504--10413Chr04:12603487..12603511 (25 bp)
TTATTCCCTTCGTTTTTGTTGCTCG
NONE
Os.5141.1.S1_at--141--9074Chr04:12603529..12603553 (25 bp)
TGCTTGCTTGCCATGGCTGTTTTAT
NONE
Os.5141.1.S1_at--712--1613Chr04:12603684..12603708 (25 bp)
AGCTGTGGTTGTGGCTCTTTTTTCC
NONE
Os.5141.1.S1_at--473--7715Chr10:14364962..14365074 (25 bp)
GGGTGATTTTTCTCATCTGTGACGG
NONE
Os.5141.1.S1_at--536--5991Chr04:12603750..12603774 (25 bp)
GATACAACCCGTCAAAGGTGTCTGT
NONE
Os.5141.1.S1_at--751--7451Chr04:12603767..12603791 (25 bp)
GTGTCTGTCACCTCTGACGGAGCTA
NONE
Os.5141.1.S1_at--568--5751Chr04:12603782..12603806 (25 bp)
GACGGAGCTACACCCGTCAAAGGTG
NONE
Os.5141.1.S1_at--160--5353Chr04:12603859..12603883 (25 bp)
GAAGAGGGTTTGAGCCCGTCACTGC
NONE
Os.5141.1.S1_at--498--1673Chr04:12603871..12603895 (25 bp)
AGCCCGTCACTGCTAGCTTGTTCTG
NONE
Os.5141.1.S1_at--593--6711Chr04:12603890..12603914 (25 bp)
GTTCTGCTGTAGTGACAACTTCTGC
NONE
Os.5141.1.S1_at--386--3272Chr04:12603905..12603929 (25 bp)
CAACTTCTGCTTGAAATGTTTCCAT
NONE
Target Sequence 
TTATTCCCTTCGTTTTTGTTGCTCGTCAGGTGATTGANGAATTGCTTGCTTGCCATGGCTGTTTTATGTGTGATGAAATG
TTCGTGAAGACTTTTCTGNGNGATGAAATGTTGTGTGTGATGAATGCGANGGCAANTNCNCAGAAGCACTTTTTTTTTGT
TTTTTTTTTATCAAAATCTACATCAGTGACGGATGTTGAGCTGTGGTTGTGGCTCTTTTTTCCTTTTTTTTTTGGGTGAT
TTTTCTCATCTGTGACGGGTCACATGATACAACCCGTCAAAGGTGTCTGTCACCTCTGACGGAGCTACACCCGTCAAAGG
TGAGTTAAGTCATCAGTGACCATTGATCTGTGACGAGGGGGTCTATCCGTCACAGAAGAGGGTTTGAGCCCGTCACTGCT
AGCTTGTTCTGCTGTAGTGACAACTTCTGCTTGAAATGTTTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis