Browse Element(s) Details


Os.51429.1.S1_at

Description gb:AK062780.1
DB_XREF= gi:32972798
TID=Os.51429.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51429 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B02, full insert sequence.
FL= gb:AK062780.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4672011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46680Os.49708.1.S1_at11/116+28354129..28357367cytochrome P450, putative, expressed
LOC_Os06g46690Os.24341.1.A1_at4/116+28362871..28367050Exostosin family protein, expressed
LOC_Os06g46690Os.5303.1.S2_at2/116+28362871..28367050Exostosin family protein, expressed
LOC_Os06g46700Os.5303.1.S1_at4/116+28367889..28370714expressed protein
LOC_Os06g46710NANA6+28372190..28375724retrotransposon protein, putative, unclassified
LOC_Os06g46720Os.51429.1.S1_at11/116+28376095..28381491retrotransposon protein, putative, unclassified, expressed
LOC_Os06g46730OsAffx.28138.1.S1_at11/116+28382667..28384807hypothetical protein
LOC_Os06g46740Os.55380.1.S1_at11/116+28387377..28388576Plastocyanin-like domain containing protein, expressed
LOC_Os06g46754Os.50821.1.S1_at10/116+28389335..28395009p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46754Os.57130.1.S1_at10/116+28389335..28395009p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46754OsAffx.28139.1.S1_at3/116+28389335..28395009p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46770Os.10139.1.S1_s_at11/116+28400733..28403579polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46770Os.57479.1.S1_x_at3/116+28400733..28403579polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46770Os.25748.1.S1_x_at1/116+28400733..28403579polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46780OsAffx.15958.1.S1_at9/116+28405288..28406220Protease inhibitor/seed storage/LTP family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51429.1.S1_at--422--5811Chr06:28376609..28376633 (25 bp)
GACGCCGTGCAACTATCCTAGAAGG
LOC_Os06g46720
Os.51429.1.S1_at--518--3711Chr06:28376626..28376650 (25 bp)
CTAGAAGGATTCACGCCATGGCGAA
LOC_Os06g46720
Os.51429.1.S1_at--1138--5391Chr06:28376784..28376808 (25 bp)
GAAGCTCTTTGATGAACCGCTGCCT
LOC_Os06g46720
Os.51429.1.S1_at--614--2551Chr06:28376834..28376858 (25 bp)
AACTGTTGCAAATCGACATGGCCGC
LOC_Os06g46720
Os.51429.1.S1_at--127--10251Chr06:28376921..28376945 (25 bp)
TTTGTTTCCCTTTTCAGCTAATCTG
LOC_Os06g46720
Os.51429.1.S1_at--537--3031Chr06:28376940..28376964 (25 bp)
AATCTGAAGTGTGTCCAGTTCCCTA
LOC_Os06g46720
Os.51429.1.S1_at--638--3071Chr06:28377006..28377030 (25 bp)
AATAACCCTGCTAAGCGTGCGTTGG
LOC_Os06g46720
Os.51429.1.S1_at--1049--6091Chr06:28377036..28377060 (25 bp)
GAGTCTGTAATCTCCTCTAGTTCCT
LOC_Os06g46720
Os.51429.1.S1_at--185--6691Chr06:28377055..28377079 (25 bp)
GTTCCTCTGTCGTTTGTTTTCAGGA
LOC_Os06g46720
Os.51429.1.S1_at--204--991Chr06:28377076..28377100 (25 bp)
AGGAGTCCAAGTTGTCCGCTGTCAA
LOC_Os06g46720
Os.51429.1.S1_at--717--4731Chr06:28377093..28377117 (25 bp)
GCTGTCAACCAGTCGCTAATTTATG
LOC_Os06g46720
Target Sequence 
GACGCCGTGCAACTATCCTAGAAGGATTCACGCCATGGCGAAGCCCGCGGTTGGCTCTGCAGGGGAATGGGACACGGCGG
CACACGATCTCCAAAGCCCAGAAGGTGACTATGAAGAAGTTGGGAATTATTGAGGAGGAAGAAGAGGCAAACCAGGAAGC
GGTTCAGGAATTCGAGAAGCTCTTTGATGAACCGCTGCCTCCGCATCATGTCCAGGCCATTGCAGAACTGTTGCAAATCG
ACATGGCCGCACCCCTTCAACCTCTGCCTGAAGTTCTTCCGGGGGTGGAGGTCGCGTCTCCGGCCTGATTGCTTTGTTTC
CCTTTTCAGCTAATCTGAAGTGTGTCCAGTTCCCTATGTTAGGTTTTAGTTTCCTAGTGTGGAATGTAAGGGGTCTTAAT
AACCCTGCTAAGCGTGCGTTGGTGAAAGAGTCTGTAATCTCCTCTAGTTCCTCTGTCGTTTGTTTTCAGGAGTCCAAGTT
GTCCGCTGTCAACCAGTCGCTAATTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis