Browse Element(s) Details


Os.51474.1.S1_at

Description gb:AK062895.1
DB_XREF= gi:32972913
TID=Os.51474.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51474 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-E08, full insert sequence.
FL= gb:AK062895.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g500902/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50050OsAffx.23502.2.S1_at5/114+29632775..29635801hypothetical protein
LOC_Os04g50060Os.7058.1.S1_at11/114+29638486..29641230GRAS family transcription factor containing protein, expressed
LOC_Os04g50070OsAffx.4135.1.S1_at11/114+29644169..29644750Zinc finger, C2H2 type family protein
LOC_Os04g50080OsAffx.14354.1.S1_at11/114+29647415..29648068hypothetical protein
LOC_Os04g50090OsAffx.26546.1.S1_at10/114+29658804..29662209Helix-loop-helix DNA-binding domain containing protein
LOC_Os04g50090Os.51474.1.S1_at2/114+29658804..29662209Helix-loop-helix DNA-binding domain containing protein
LOC_Os04g50100Os.52382.1.S1_at11/114+29664139..29666053Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g50110Os.16906.1.S1_at10/114+29669014..29672108RNA recognition motif family protein, expressed
LOC_Os04g50120Os.14686.1.S1_at10/114+29675725..29677758expressed protein
LOC_Os04g50130NANA4+29680323..29680751transposon protein, putative, unclassified
LOC_Os04g50140NANA4+29683113..29685630retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51474.1.S1_at--667--10771Chr04:29661339..29661363 (25 bp)
TTGATGCTGCTCCATATCTGCCATG
LOC_Os04g50090
Os.51474.1.S1_at--609--4891Chr04:29661371..29661395 (25 bp)
GCTTTTGACCAGAGATTCCATGGCG
LOC_Os04g50090
Os.51474.1.S1_at--922--6771Chr04:29662205..29662229 (25 bp)
GTTAGCGTGGCCACCTAGCAAGATA
NONE
Os.51474.1.S1_at--219--3931Chr04:29662239..29662263 (25 bp)
CGGCGGCCGGTGTAACAAATCTGTA
NONE
Os.51474.1.S1_at--983--9831Chr04:29662262..29662286 (25 bp)
TAAAGTGTAGCGGATCTCGATCGAT
NONE
Os.51474.1.S1_at--1068--7331Chr04:29662353..29662377 (25 bp)
GTGCAATAACATGCGGCCCGTTGTA
NONE
Os.51474.1.S1_at--139--1111Chr04:29662411..29662435 (25 bp)
AGTGTGTGCGTTTTGCGGTTTTCTC
NONE
Os.51474.1.S1_at--356--10351Chr04:29662429..29662453 (25 bp)
TTTTCTCGGCGGAAGTCGACGTGGA
NONE
Os.51474.1.S1_at--895--4331Chr04:29662507..29662531 (25 bp)
CCATGTTGGGCCGACTAGGTACACA
NONE
Os.51474.1.S1_at--1161--5431Chr04:29662519..29662543 (25 bp)
GACTAGGTACACAGCCTATGGGCTT
NONE
Os.51474.1.S1_at--73--10771Chr04:29662542..29662566 (25 bp)
TTGAGATTAGCACATGGTCCGGCCC
NONE
Target Sequence 
TTGATGCTGCTCCATATCTGCCATGGCCGATTGCTTTTGACCAGAGATTCCATGGCGGAAAGGCCATTGCTTCCCTTGGC
CCCTTGGGTGGAGGAAGGGTGCGGCATGGCGACGGTGGACGACATCGCAGCGGCGGTGCACCACGTGCTCTGCATCATCG
ACGCCGAGGCGGCGTCGCAGATGCTGCTCGCCGGGGAGGCCTCCGGTTAGCGTGGCCACCTAGCAAGATAGGCGCGCGGC
GGCGGCCGGTGTAACAAATCTGTAAAGTGTAGCGGATCTCGATCGATCTCTCCCCTCCCGTAGGCGAGTCGGGTGATTTG
GGGGTCGGTGGCGTAGGGCAAAAGCCCGTGTAAGTGCAATAACATGCGGCCCGTTGTAATCCTAGCCGGTTTTTTTTTTT
TTTGCCGTCGAGTGTGTGCGTTTTGCGGTTTTCTCGGCGGAAGTCGACGTGGAATCCGGGGGAGTGAGACGGTGAAGAGA
GGGTTTTTTTATCCTTGCTTGTCCCTCCATGTTGGGCCGACTAGGTACACAGCCTATGGGCTTGAGATTAGCACATGGTC
CGGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis