Browse Element(s) Details


Os.51533.1.S1_at

Description gb:AK063014.1
DB_XREF= gi:32973032
TID=Os.51533.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-A08, full insert sequence.
FL= gb:AK063014.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3465011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34590OsAffx.31829.1.S1_at11/116+20117370..20119153hypothetical protein
LOC_Os06g34600OsAffx.15923.1.S1_at1/116+20120528..20124292hypothetical protein
LOC_Os06g34600OsAffx.8794.1.S1_at1/116+20120528..20124292hypothetical protein
LOC_Os06g34610NANA6+20125202..20125871expressed protein
LOC_Os06g34620NANA6+20130647..20131171Zinc finger, C3HC4 type family protein
LOC_Os06g34630OsAffx.5005.1.S1_at10/116+20133624..20134277hypothetical protein
LOC_Os06g34640NANA6+20137223..20137693Zinc finger, C3HC4 type family protein
LOC_Os06g34650Os.51533.1.S1_at11/116+20142948..20143669Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34660Os.56170.1.S1_at10/116+20144121..20147102glucan endo-1,3-beta-glucosidase 1 precursor, putative, expressed
LOC_Os06g34660OsAffx.5006.1.S1_at10/116+20144121..20147102glucan endo-1,3-beta-glucosidase 1 precursor, putative, expressed
LOC_Os06g34670OsAffx.31347.1.S1_at10/116+20148014..20149254hypothetical protein
LOC_Os06g34680NANA6+20149649..20150755transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34690Os.12204.1.S1_at11/116+20157644..20164610T-complex protein 1, gamma subunit, putative, expressed
LOC_Os06g34700OsAffx.5008.1.S1_at10/116+20165748..20167757hypothetical protein
LOC_Os06g34710OsAffx.15743.1.S1_at11/116+20168369..20171314expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51533.1.S1_at--803--9491Chr06:20143274..20143298 (25 bp)
TCTGCCTCGGCGTCATCCATGTCGG
LOC_Os06g34650
Os.51533.1.S1_at--772--9491Chr06:20143388..20143412 (25 bp)
TCTGCCGGTGCAGGGTTGATCATCC
LOC_Os06g34650
Os.51533.1.S1_at--1037--971Chr06:20143424..20143448 (25 bp)
AGGAGACGGCCAGGCAGCTTGCCCA
LOC_Os06g34650
Os.51533.1.S1_at--528--4351Chr06:20143446..20143470 (25 bp)
CCAGCTTTCCCCAGCATAGATAGAA
LOC_Os06g34650
Os.51533.1.S1_at--243--6491Chr06:20143464..20143488 (25 bp)
GATAGAATTCACCACGTCTGCAAGA
LOC_Os06g34650
Os.51533.1.S1_at--902--8031Chr06:20143502..20143526 (25 bp)
GGAGTTAGGATTCTATTGGACTTTT
LOC_Os06g34650
Os.51533.1.S1_at--720--7331Chr06:20143540..20143564 (25 bp)
GTGCATATGCCGTGTATCAATTGAT
LOC_Os06g34650
Os.51533.1.S1_at--238--6251Chr06:20143562..20143586 (25 bp)
GATGGATGTGAATGTAGTACCTGAC
LOC_Os06g34650
Os.51533.1.S1_at--1055--6971Chr06:20143578..20143602 (25 bp)
GTACCTGACTGGAAATGTGGATACA
LOC_Os06g34650
Os.51533.1.S1_at--994--3431Chr06:20143628..20143652 (25 bp)
CAGATTGTTAATAGACTTCATTGCA
LOC_Os06g34650
Os.51533.1.S1_at--168--9591Chr06:20143645..20143669 (25 bp)
TCATTGCAAGATGAGCTTTTACCAG
LOC_Os06g34650
Target Sequence 
TCTGCCTCGGCGTCATCCATGTCGGCGCCATGGTGAAGCTGCTGCCGGCGTGCGCCCACATCTACCACGTCGACTGCATC
GACCTGTGGCTGTCTTCCCACCCGACGTGCCCCCTCTGCCGGTGCAGGGTTGATCATCCTGGGCAGGGGCAGGAGACGGC
CAGGCAGCTTGCCCAGCTTTCCCCAGCATAGATAGAATTCACCACGTCTGCAAGAAATGTATTAGTTAGGAGTTAGGATT
CTATTGGACTTTTTTCAAGAAAAAATGTGCATATGCCGTGTATCAATTGATGGATGTGAATGTAGTACCTGACTGGAAAT
GTGGATACAGTCATCAGGGTTTCATGAATTTCTTCAGATTGTTAATAGACTTCATTGCAAGATGAGCTTTTACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis