Browse Element(s) Details


Os.51572.1.S1_x_at

Description gb:AK063092.1
DB_XREF= gi:32973110
TID=Os.51572.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-B03, full insert sequence.
FL= gb:AK063092.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4716911/11hypothetical protein
LOC_Os02g531203/11separase, putative, expressed
LOC_Os12g020001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47130Os.41695.15.S1_s_at11/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47130Os.41695.3.S1_x_at5/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47130Os.41695.4.S1_x_at5/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47130Os.41695.2.S1_x_at5/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47130Os.41695.5.S1_x_at5/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47140Os.22796.1.S1_at11/113+26628429..26631307expressed protein
LOC_Os03g47149NANA3+26637611..26639162hypothetical protein
LOC_Os03g47160OsAffx.3538.1.S1_at4/113+26640448..26640906hypothetical protein
LOC_Os03g47169Os.51572.1.S1_x_at11/113+26643153..26644461hypothetical protein
LOC_Os03g47169OsAffx.25595.2.S1_x_at11/113+26643153..26644461hypothetical protein
LOC_Os03g47169OsAffx.25595.2.S1_at11/113+26643153..26644461hypothetical protein
LOC_Os03g47178NANA3+26644835..26645222hypothetical protein
LOC_Os03g47190Os.54665.1.S1_at11/113+26655415..26657212expressed protein
LOC_Os03g47200NANA3+26665460..26665930bZIP transcription factor family protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51572.1.S1_x_at--658--5871Chr03:26644325..26644349 (25 bp)
GAGAGGTAGCGGCACGTGGCGGCCA
LOC_Os03g47169
Os.51572.1.S1_x_at--126--3971Chr03:26644264..26644288 (25 bp)
CGGAGGCAGGGCTCTGGCGGTTGTG
LOC_Os03g47169
Os.51572.1.S1_x_at--1124--6194Chr12:583109..583132 (24 bp)
GAGGCAACCCCGACGCTGATCGACG
LOC_Os12g02000
Os.51572.1.S1_x_at--540--9653Chr10:3911081..3911105 (25 bp)
TCAGCAAGCTCAACAACCACCTTGA
NONE
Os.51572.1.S1_x_at--184--3253Chr10:3911068..3911092 (25 bp)
CAACCACCTTGATAAGATGCTGAAG
NONE
Os.51572.1.S1_x_at--153--7072Chr03:26644017..26644041 (25 bp)
GTAAGATTTCTTATGTTATGGCAAA
LOC_Os03g47169
Os.51572.1.S1_x_at--785--5512Chr10:3911015..3911039 (25 bp)
GAAAATTGATTCCACAACGCTTGAT
NONE
Os.51572.1.S1_x_at--615--3172Chr10:3911012..3911036 (25 bp)
AATTGATTCCACAACGCTTGATGCA
NONE
Os.51572.1.S1_x_at--752--4371Chr03:26643977..26644001 (25 bp)
CCACAACGCTTGATGCATTCCTAAA
LOC_Os03g47169
Os.51572.1.S1_x_at--436--3252Chr10:3910999..3911025 (25 bp)
CAACGCTTGATGCATTCCTAAAAAA
NONE
Os.51572.1.S1_x_at--1093--6871Chr03:26643947..26643971 (25 bp)
GTATTTTCTGTTGTTGAAATCGATC
LOC_Os03g47169
Target Sequence 
GAGAGGTAGCGGCACGTGGCGGCCAGCGGCCGGCGGGAGAGGAGGAAGCGGTGCGCAGCGGCGGAGGCAGGGCTCTGGCG
GTTGTGGGCGGAAGAGGAATCGGCGACGGGAGGTGGCTCTGGCTGCGGCGGTCGCGGTCGCTGCACGTGCTCGACCCCTT
CGCGGCCGCTGCCGCGGCCGCCGCTGCCGAGGCTCTGTCCGGGGAGGCCGCCATCGCCGCGGTCGGAGCGGCGGCGGAGG
AGGCAACCCCGACGCTGATCGACGACTCCCCTCAGCAAGCTCAACAACCACCTTGATAAGATGCTGAAGTAAGATTTCTT
ATGTTATGGCAAAAACTGAAAATTGATTCCACAACGCTTGATGCATTCCTAAAAAAATGTATTTTCTGTTGTTGAAATCG
ATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51572.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis