Browse Element(s) Details

Os.51591.1.S1_at

Description

gb:AK063127.1
DB_XREF= gi:32973145
TID=Os.51591.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51591 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-F02, full insert sequence.
FL= gb:AK063127.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os08g09930	11/11	expressed protein
LOC_Os07g36940	2/11	MIF4G domain containing protein, expressed
LOC_Os11g36890	1/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os08g09900	Os.26946.1.S1_at	11/11	8	+	5707601..5712816	hAT family dimerisation domain containing protein, expressed
LOC_Os08g09910	Os.52269.1.S1_at	9/11	8	+	5714108..5717477	F-box domain containing protein
LOC_Os08g09910	Os.54846.1.S1_x_at	1/11	8	+	5714108..5717477	F-box domain containing protein
LOC_Os08g09920	Os.40034.1.A1_s_at	11/11	8	+	5721681..5725679	F-box domain containing protein, expressed
LOC_Os08g09920	Os.54846.1.S1_x_at	11/11	8	+	5721681..5725679	F-box domain containing protein, expressed
LOC_Os08g09920	Os.54846.1.S1_at	11/11	8	+	5721681..5725679	F-box domain containing protein, expressed
LOC_Os08g09920	Os.54846.1.S1_s_at	11/11	8	+	5721681..5725679	F-box domain containing protein, expressed
LOC_Os08g09920	OsAffx.29124.1.S1_at	2/11	8	+	5721681..5725679	F-box domain containing protein, expressed
LOC_Os08g09930	Os.51591.1.S1_at	11/11	8	+	5728864..5729607	expressed protein
LOC_Os08g09940	Os.9634.1.S1_at	11/11	8	+	5740394..5745485	GTP-binding protein PTD004, putative, expressed
LOC_Os08g09950	Os.49536.1.S1_at	11/11	8	+	5745325..5747403	Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os08g09960	OsAffx.29126.1.S1_at	11/11	8	+	5748821..5749249	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006412	biological_process	protein biosynthesis
GO:0006413	biological_process	translational initiation
GO:0007059	biological_process	chromosome segregation
GO:0009615	biological_process	response to virus
GO:0005634	cellular_component	nucleus
GO:0005737	cellular_component	cytoplasm
GO:0003723	molecular_function	RNA binding
GO:0003743	molecular_function	translation initiation factor activity
GO:0005524	molecular_function	ATP binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.51591.1.S1_at--440--1061	1	Chr08:5729170..5729194 (25 bp)	TTCCCTCGCATCTAACCGCAGGTAA	LOC_Os08g09930
Os.51591.1.S1_at--445--429	1	Chr08:5729173..5729197 (25 bp)	CCTCGCATCTAACCGCAGGTAACGA	LOC_Os08g09930
Os.51591.1.S1_at--548--493	1	Chr08:5729177..5729201 (25 bp)	GCATCTAACCGCAGGTAACGATTGA	LOC_Os08g09930
Os.51591.1.S1_at--1091--979	2	Chr08:5729182..5729206 (25 bp)	TAACCGCAGGTAACGATTGATTGAT	LOC_Os08g09930
Os.51591.1.S1_at--639--421	2	Chr08:5729185..5729209 (25 bp)	CCGCAGGTAACGATTGATTGATTGA	LOC_Os08g09930
Os.51591.1.S1_at--733--659	1	Chr08:5729204..5729228 (25 bp)	GATTGATGGATTGGATGTCCCCCAT	LOC_Os08g09930
Os.51591.1.S1_at--1072--797	1	Chr08:5729216..5729240 (25 bp)	GGATGTCCCCCATGATTTGATCTGG	LOC_Os08g09930
Os.51591.1.S1_at--357--885	1	Chr08:5729233..5729257 (25 bp)	TGATCTGGGGACAAGCGGCCTCCGC	LOC_Os08g09930
Os.51591.1.S1_at--1039--929	4	Chr09:12050286..12050310 (25 bp)	TCCCCGTCCCGTGGCGCCTGGAGAG	NONE
Os.51591.1.S1_at--991--747	3	Chr08:5729548..5729572 (25 bp)	GTGGGCCCACCATTTTCTAATTATT	LOC_Os08g09930
Os.51591.1.S1_at--837--755	1	Chr08:5729550..5729574 (25 bp)	GGGCCCACCATTTTCTAATTATTAT	LOC_Os08g09930

Target Sequence

TTCCCTCGCATCTAACCGCAGGTAACGATTGATTGATTGATGGATTGGATGTCCCCCATGATTTGATCTGGGGACAAGCG
GCCTCCGCCGGTGCATGTCCTCGTCCCCGCACCACGGCCTCAGCACCATGATCCGTCCGCCGCTGCCGCCGTCACCGCCG
CGTCGCCAGCCGCCGTCGCCGGCCGCCGAACTTCCCCGTCCCGTGGCGCCTGGAGAGAGAGGAGAAGGGATGAAGAAGGG
TAGGGAGAGGATGACATGTGGGGCCCACGTGGGCCCACCATTTTCTAATTATTAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis