Browse Element(s) Details


Os.51697.1.S1_at

Description gb:AK063449.1
DB_XREF= gi:32973467
TID=Os.51697.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51697 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ORC5 mRNA for origin recognition complex 5, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-F10, full insert sequence.
FL= gb:AK063449.1 gb:AB099524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5520011/11origin recognition complex subunit 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55140Os.54730.1.S1_at10/113+31321240..31326138transducin family protein, putative, expressed
LOC_Os03g55150Os.318.1.S1_at11/113+31327332..31329830Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os03g55150Os.57450.1.S1_x_at1/113+31327332..31329830Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os03g55164Os.2898.1.S1_at11/113+31330339..31337999WRKY DNA binding domain containing protein, expressed
LOC_Os03g55180OsAffx.13491.1.S1_at11/113+31338223..31341263expressed protein
LOC_Os03g55189Os.50619.1.S1_at1/113+31343187..31344256NA
LOC_Os03g55189Os.50619.1.S1_x_at1/113+31343187..31344256NA
LOC_Os03g55200Os.51697.1.S1_at11/113+31349833..31352265origin recognition complex subunit 5, putative, expressed
LOC_Os03g55210OsAffx.25717.1.S1_at11/113+31353463..31356366protein kinase family protein, putative, expressed
LOC_Os03g55220Os.51847.1.S1_x_at11/113+31360998..31365561Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g55230Os.31504.1.S1_at11/113+31375286..31376903Cytochrome P450 81E1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51697.1.S1_at--132--7871Chr03:31351603..31351627 (25 bp)
GGTTTGATGTCGGATGTTCTACTAC
LOC_Os03g55200
Os.51697.1.S1_at--510--7351Chr03:31351641..31351665 (25 bp)
GTGCAATTCTAATTTCCTCTCGAAA
LOC_Os03g55200
Os.51697.1.S1_at--618--6131Chr03:31351684..31351708 (25 bp)
GAGGGCTCAGCTAGGTACCGTTCAA
LOC_Os03g55200
Os.51697.1.S1_at--837--6531Chr03:31351720..31351867 (25 bp)
GATTTAGCTCTCAAGGTCGCCAGGA
LOC_Os03g55200
Os.51697.1.S1_at--733--9091Chr03:31351859..31351883 (25 bp)
TCGCCAGGAGTGTGAATTTTCCCCT
LOC_Os03g55200
Os.51697.1.S1_at--421--5191Chr03:31351872..31351896 (25 bp)
GAATTTTCCCCTCTCAAAGTATATG
LOC_Os03g55200
Os.51697.1.S1_at--333--6251Chr03:31351947..31351971 (25 bp)
GATGGTTCTCCAGTTACCTTGATTG
LOC_Os03g55200
Os.51697.1.S1_at--312--8891Chr03:31351980..31352004 (25 bp)
TGAGGCAAGTGCTAGATGTCCCCTT
LOC_Os03g55200
Os.51697.1.S1_at--1150--10551Chr03:31352017..31352041 (25 bp)
TTCTTCTGTTATTTCTCCTTCAAAG
LOC_Os03g55200
Os.51697.1.S1_at--109--5171Chr03:31352082..31352106 (25 bp)
GCAAGCTCCAGTTAACTGCCTTGGA
LOC_Os03g55200
Os.51697.1.S1_at--536--10811Chr03:31352119..31352143 (25 bp)
TTGGCCATGTGACTTAACCATCAGT
LOC_Os03g55200
Target Sequence 
GGTTTGATGTCGGATGTTCTACTACAGTTGTCAACATTGTGCAATTCTAATTTCCTCTCGAAAAGCCGGAGCTGCCCATT
AGAGGGCTCAGCTAGGTACCGTTCAAACATTGATGAAGATTTAGCTCTCAAGGTCGCCAGGAGTGTGAATTTTCCCCTCT
CAAAGTATATGTACAGAAGATAGCCTTTCGATATTTACTATAAGCAGCAAAAACTACTGGTGATGGTTCTCCAGTTACCT
TGATTGTAGAGTATTGAGGCAAGTGCTAGATGTCCCCTTTTTCCTTTTAGTTTCTTCTGTTATTTCTCCTTCAAAGATTG
AGTACTATAGCCAATTTTGAATTTAATGTTGACTGAGCAAGCTCCAGTTAACTGCCTTGGAAGTTTCAATATGTTGGCCA
TGTGACTTAACCATCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis