Browse Element(s) Details


Os.5171.1.S1_at

Description gb:AK064695.1
DB_XREF= gi:32974713
TID=Os.5171.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5171 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-F08, full insert sequence.
FL= gb:AK064695.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1320010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13150Os.8408.1.S1_at11/112+7006064..7010650Pollen-specific protein SF21, putative, expressed
LOC_Os02g13160Os.19456.1.S1_x_at7/112+7012780..7014847F-box family protein, putative
LOC_Os02g13160Os.19456.1.S1_at7/112+7012780..7014847F-box family protein, putative
LOC_Os02g13160Os.3246.2.S1_at2/112+7012780..7014847F-box family protein, putative
LOC_Os02g13170Os.17268.1.S1_at10/112+7016805..7024340Mitochondrial carrier protein, expressed
LOC_Os02g13180NANA2+7024790..7025386Skp1 family, dimerisation domain containing protein, expressed
LOC_Os02g13190OsAffx.19451.3.S1_s_at11/112+7026620..7028304expressed protein
LOC_Os02g13190OsAffx.19451.3.S1_x_at11/112+7026620..7028304expressed protein
LOC_Os02g13190OsAffx.24480.1.S1_x_at1/112+7026620..7028304expressed protein
LOC_Os02g13200Os.5171.1.S1_at10/112+7032348..7034839expressed protein
LOC_Os02g13210OsAffx.32083.1.S1_x_at8/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.3.S1_x_at8/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.1.S1_at6/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.4.S1_x_at3/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.2.S1_x_at1/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13220OsAffx.19451.4.S1_x_at11/112+7044795..7046102expressed protein
LOC_Os02g13220OsAffx.19451.5.S1_x_at3/112+7044795..7046102expressed protein
LOC_Os02g13230OsAffx.7362.1.S1_x_at1/112+7050459..7051274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13240Os.46314.3.S1_at3/112+7053347..7055389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13240OsAffx.7362.1.S1_x_at1/112+7053347..7055389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13250OsAffx.23366.2.S1_s_at1/112+7056796..7060377transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13250OsAffx.23366.1.S1_at1/112+7056796..7060377transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5171.1.S1_at--432--1171Chr02:7034242..7034266 (25 bp)
AGTACGCCGAACTCGTCAGGGATGT
LOC_Os02g13200
Os.5171.1.S1_at--499--10591Chr02:7034183..7034207 (25 bp)
TTCTCCTCCTACAAGGACCAGATTG
LOC_Os02g13200
Os.5171.1.S1_at--338--10871NONE
TTGGATTTGGTCTTCATGTTGTTCT
NONE
Os.5171.1.S1_at--60--6651Chr02:7033140..7033164 (25 bp)
GTTGTTCTTATAATGTTCACGGGTT
LOC_Os02g13200
Os.5171.1.S1_at--74--7951Chr02:7033107..7033131 (25 bp)
GGATTTGTTGCTTTCAGAGCTCTGT
LOC_Os02g13200
Os.5171.1.S1_at--349--5911Chr02:7033091..7033115 (25 bp)
GAGCTCTGTTCAACAACAGTCCTGT
LOC_Os02g13200
Os.5171.1.S1_at--78--4971Chr02:7032724..7032748 (25 bp)
GCATCTTAGGATTAGTCGGTGGCAT
LOC_Os02g13200
Os.5171.1.S1_at--620--1471Chr02:7032657..7032681 (25 bp)
AGAATTGGCCACTTCTGTTCCAAGA
LOC_Os02g13200
Os.5171.1.S1_at--800--10811Chr02:7032423..7032447 (25 bp)
TTGTCGATGTTCTATGCCAGTGCAC
LOC_Os02g13200
Os.5171.1.S1_at--1108--4411Chr02:7032408..7032432 (25 bp)
GCCAGTGCACAATCTGTCTGATCAG
LOC_Os02g13200
Os.5171.1.S1_at--1079--131Chr02:7032375..7032399 (25 bp)
ATTACACGGCGTTATCAGTCGATAT
LOC_Os02g13200
Target Sequence 
AGTACGCCGAACTCGTCAGGGATGTCGCGCCGCCGGCGAAGGAGGACAGCCCCGAGCTCTTCTCCTCCTACAAGGACCAG
ATTGGATTTGGTCTTCATGTTGTTCTTATAATGTTCACGGGTTATTTGGTTGGATTTGTTGCTTTCAGAGCTCTGTTCAA
CAACAGTCCTGTAATGAATGCTGCTGGAGGCATCTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTNCTTTTCATCA
TCAGATCATCTAGTAAAGAATTGGCCACTTCTGTTCCAAGACCAAAGAAAGTTCAGTAGACATCTGTTTTGGTTTCAATA
GTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTCTGATCTGAAGTGAACAATACGAATGATGAGAAACATGTTGT
AAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATT
ATCTTTAGTTTTGTCGATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACACGGCGTTATCAGTCGA
TAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis