Browse Element(s) Details


Os.51735.1.S1_at

Description gb:AK063565.1
DB_XREF= gi:32973583
TID=Os.51735.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51735 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-F08, full insert sequence.
FL= gb:AK063565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4633010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46310OsAffx.14296.1.S1_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S1_s_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S2_at10/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46320Os.50904.1.S1_at11/114+27241763..27244397Protein kinase domain containing protein, expressed
LOC_Os04g46330Os.51735.1.S1_s_at11/114+27247252..27248767expressed protein
LOC_Os04g46330Os.51735.1.S1_at10/114+27247252..27248767expressed protein
LOC_Os04g46340OsAffx.4106.1.S1_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.4106.1.S1_x_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.32242.1.S1_at1/114+27252261..27254789hypothetical protein
LOC_Os04g46350OsAffx.4107.1.S1_s_at11/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.50599.1.S1_x_at10/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.20628.1.S1_at1/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46360OsAffx.28186.2.S1_x_at1/114+27267833..27268693hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51735.1.S1_at--842--8571NONE
TGGTGACAACCAAACTACGAGGAGG
NONE
Os.51735.1.S1_at--218--4091Chr04:27247488..27247512 (25 bp)
CGAGCGAGGCATGCATGCGGTGCGC
LOC_Os04g46330
Os.51735.1.S1_at--16--9151Chr04:27247473..27247497 (25 bp)
TGCGGTGCGCCACGATACGTACCTA
LOC_Os04g46330
Os.51735.1.S1_at--365--4411Chr04:27247465..27247489 (25 bp)
GCCACGATACGTACCTAGCACGAGT
LOC_Os04g46330
Os.51735.1.S1_at--590--6471Chr04:27247460..27247484 (25 bp)
GATACGTACCTAGCACGAGTACGGG
LOC_Os04g46330
Os.51735.1.S1_at--654--1791Chr04:27247440..27247464 (25 bp)
ACGGGGGTTCCTCATGTGTACATTT
LOC_Os04g46330
Os.51735.1.S1_at--105--9571Chr04:27247401..27247425 (25 bp)
TCTTCTTTTTGGGTGTTCTTGTGTA
LOC_Os04g46330
Os.51735.1.S1_at--809--9551Chr04:27247398..27247422 (25 bp)
TCTTTTTGGGTGTTCTTGTGTACGT
LOC_Os04g46330
Os.51735.1.S1_at--420--10551Chr04:27247386..27247410 (25 bp)
TTCTTGTGTACGTAAGTGGAACATG
LOC_Os04g46330
Os.51735.1.S1_at--216--7531Chr04:27247371..27247395 (25 bp)
GTGGAACATGAACAGATGGTGTAAA
LOC_Os04g46330
Os.51735.1.S1_at--642--8031Chr04:27247332..27247356 (25 bp)
GGAGTGTGAGTATCACTGTTCGTGC
LOC_Os04g46330
Target Sequence 
TGGTGACAACCAAACTACGAGGAGGAGGAAGGTGACGTGGATAGATTGGACGACGACGATGGCTCATGCGACGAAGAGCT
CTTCGAGTTGGCCACGAGGCTGGCGCCGGAGGAGGAGGAGGTGGTGGAGGACGAGGTGGACAGGAAAGCCGACGAGTTCA
TAGCCAAATTTAGGGAGCAGATTAGGATGCAGAGGGTGGTCGAGCCGGGCAGGAGATGAGCAAACACGGAGGGAGCGAGC
GAGGCATGCATGCGGTGCGCCACGATACGTACCTAGCACGAGTACGGGGGTTCCTCATGTGTACATTTTTTTTCTTTTTT
CTTCTTCTTTTTGGGTGTTCTTGTGTACGTAAGTGGAACATGAACAGATGGTGTAAATGTGGAGAGGAATGGGAGTGTGA
GTATCACTGTTCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis