Browse Element(s) Details


Os.51735.1.S1_s_at

Description gb:AK063565.1
DB_XREF= gi:32973583
TID=Os.51735.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51735 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-F08, full insert sequence.
FL= gb:AK063565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4633011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46310OsAffx.14296.1.S1_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S1_s_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S2_at10/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46320Os.50904.1.S1_at11/114+27241763..27244397Protein kinase domain containing protein, expressed
LOC_Os04g46330Os.51735.1.S1_s_at11/114+27247252..27248767expressed protein
LOC_Os04g46330Os.51735.1.S1_at10/114+27247252..27248767expressed protein
LOC_Os04g46340OsAffx.4106.1.S1_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.4106.1.S1_x_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.32242.1.S1_at1/114+27252261..27254789hypothetical protein
LOC_Os04g46350OsAffx.4107.1.S1_s_at11/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.50599.1.S1_x_at10/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.20628.1.S1_at1/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46360OsAffx.28186.2.S1_x_at1/114+27267833..27268693hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51735.1.S1_s_at--556--8331Chr04:27247891..27247915 (25 bp)
GGCGGCCACAATTTCCGGTCCAAAT
LOC_Os04g46330
Os.51735.1.S1_s_at--777--3971Chr04:27247876..27247900 (25 bp)
CGGTCCAAATCAGCGATCCAAGCGT
LOC_Os04g46330
Os.51735.1.S1_s_at--856--3211Chr04:27247858..27247882 (25 bp)
CAAGCGTCGAGGAGTACTTTCCCGA
LOC_Os04g46330
Os.51735.1.S1_s_at--357--9331Chr04:27247831..27247855 (25 bp)
TCGCCATTCGACGATCACGATTTGG
LOC_Os04g46330
Os.51735.1.S1_s_at--40--5971Chr04:27247804..27247828 (25 bp)
GAGAAGGTTGCAGCGTCAGACATCA
LOC_Os04g46330
Os.51735.1.S1_s_at--785--7111Chr04:27247790..27247814 (25 bp)
GTCAGACATCAGTTCGTTCAGCAGC
LOC_Os04g46330
Os.51735.1.S1_s_at--322--6751Chr04:27247775..27247799 (25 bp)
GTTCAGCAGCGATGATGTGGTCACC
LOC_Os04g46330
Os.51735.1.S1_s_at--846--791Chr04:27247761..27247785 (25 bp)
ATGTGGTCACCGACGACGGCGAAGA
LOC_Os04g46330
Os.51735.1.S1_s_at--303--5791Chr04:27247672..27247696 (25 bp)
GACGACGATGGCTCATGCGACGAAG
LOC_Os04g46330
Os.51735.1.S1_s_at--164--5371Chr04:27247651..27247675 (25 bp)
GAAGAGCTCTTCGAGTTGGCCACGA
LOC_Os04g46330
Os.51735.1.S1_s_at--179--1651Chr04:27247577..27247601 (25 bp)
AGCCGACGAGTTCATAGCCAAATTT
LOC_Os04g46330
Target Sequence 
GGCGGCCACAATTTCCGGTCCAAATCAGCGATCCAAGCGTCGAGGAGTACTTTCCCGACATCGCCATTCGACGATCACGA
TTTGGAAGAGAAGGTTGCAGCGTCAGACATCAGTTCGTTCAGCAGCGATGATGTGGTCACCGACGACGGCGAAGATGGTG
ACAACCAAACTACGAGGAGGAGGAAGGTGACGTGGATAGATTGGACGACGACGATGGCTCATGCGACGAAGAGCTCTTCG
AGTTGGCCACGAGGCTGGCGCCGGAGGAGGAGGAGGTGGTGGAGGACGAGGTGGACAGGAAAGCCGACGAGTTCATAGCC
AAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51735.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis