Browse Element(s) Details


Os.51794.1.S1_at

Description gb:AK063733.1
DB_XREF= gi:32973751
TID=Os.51794.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51794 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-E10, full insert sequence.
FL= gb:AK063733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1237010/11Cell division protein ftsH homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12320Os.11771.1.S1_at11/116+6677246..6679863Transmembrane amino acid transporter protein, expressed
LOC_Os06g12330Os.54785.1.S1_at11/116+6681438..6684948amino acid carrier, putative, expressed
LOC_Os06g12340OsAffx.15385.1.S1_at11/116+6685570..6686307hypothetical protein
LOC_Os06g12350Os.54811.1.S1_at11/116+6690065..6694064Transmembrane amino acid transporter protein, expressed
LOC_Os06g12360OsAffx.15386.1.S1_at11/116+6695667..6699783RWP-RK domain containing protein, expressed
LOC_Os06g12360OsAffx.27652.1.S1_x_at1/116+6695667..6699783RWP-RK domain containing protein, expressed
LOC_Os06g12370Os.51794.1.S1_x_at10/116+6700281..6703417Cell division protein ftsH homolog, putative, expressed
LOC_Os06g12370Os.51794.1.S1_at10/116+6700281..6703417Cell division protein ftsH homolog, putative, expressed
LOC_Os06g12380OsAffx.18105.2.A1_at11/116+6711479..6712222hypothetical protein
LOC_Os06g12390Os.49253.1.S1_at11/116+6715188..6720901Galactoside-binding lectin family protein, expressed
LOC_Os06g12400Os.17425.1.S1_at11/116+6724321..6733446PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0010027biological_processthylakoid membrane organization and biogenesis
GO:0010205biological_processphotoinhibition
GO:0010206biological_processphotosystem II repair
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0008233molecular_functionpeptidase activity
GO:0008237molecular_functionmetallopeptidase activity
GO:0008270molecular_functionzinc ion binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51794.1.S1_at--1130--5731Chr06:6700723..6700747 (25 bp)
GACGGCGTTCGGGATGTCGGAGATC
LOC_Os06g12370
Os.51794.1.S1_at--1101--9111Chr06:6700643..6700667 (25 bp)
TGCTGGCCCGGAGCTCCATGTCGGA
LOC_Os06g12370
Os.51794.1.S1_at--927--3971Chr06:6700592..6700616 (25 bp)
CGGTGAGGACCATCGTCGACGAGGC
LOC_Os06g12370
Os.51794.1.S1_at--105--1231Chr06:6700472..6700496 (25 bp)
AGTTCAGGGCGATCTTGTCGGAGCA
LOC_Os06g12370
Os.51794.1.S1_at--160--3471Chr06:6700468..6700492 (25 bp)
CAGGGCGATCTTGTCGGAGCACGTC
LOC_Os06g12370
Os.51794.1.S1_at--353--951Chr06:6700410..6700434 (25 bp)
AGGACACAGCAGCTGGCCACTGCTT
LOC_Os06g12370
Os.51794.1.S1_at--961--1611Chr06:6700400..6700424 (25 bp)
AGCTGGCCACTGCTTGAGCAGCAGT
LOC_Os06g12370
Os.51794.1.S1_at--602--10752Chr07:23066690..23066709 (20 bp)
TTGAGCAGCAGTAGTGGTAGTACAC
NONE
Os.51794.1.S1_at--1028--5931Chr06:6700332..6700356 (25 bp)
GAGCAATGTAATGTACTGTAGTAAC
LOC_Os06g12370
Os.51794.1.S1_at--524--7051Chr06:6700303..6700327 (25 bp)
GTAAGGCAGTTGATTGACAAACATA
LOC_Os06g12370
Os.51794.1.S1_at--878--251Chr06:6700281..6700305 (25 bp)
ATATGAATGCATTTAGTTTGTTCTC
NONE
Target Sequence 
GACGGCGTTCGGGATGTCGGAGATCGGGCCGTGGGCGCTGGCGGAGCCGGCGGCGCAGGGCGGCGACGTGGTGCTGCGGA
TGCTGGCCCGGAGCTCCATGTCGGAGAGGCTCGCCGCCGACATCGACGCCGCGGTGAGGACCATCGTCGACGAGGCGTAC
GAGGTGGCCAAGGCGCACGTGAGGAGGAACCGCGCCGCCATCGACCAGCTGGTGGACGTGCTCATGGAGGAGGAGACGCT
CGGCGGCGACGAGTTCAGGGCGATCTTGTCGGAGCACGTCGACATCGGCAAGGAGCGGCGGGAAACGGCGGCGAGGACAC
AGCAGCTGGCCACTGCTTGAGCAGCAGTAGTGGTAGTACACAGAAGTGTAGTGTGTAGAGATATTTACATAGAGCAATGT
AATGTACTGTAGTAACAAATGTAAGGCAGTTGATTGACAAACATATGAATGCATTTAGTTTGTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51794.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis