Browse Element(s) Details


Os.51804.2.S1_at

Description gb:AK063776.1
DB_XREF= gi:32973794
TID=Os.51804.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51804 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132I06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-D02, full insert sequence.
FL= gb:AK063776.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g464409/11ribosomal protein L18 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46380Os.34151.1.S2_a_at11/112+28260700..28263757purine permease family protein, putative, expressed
LOC_Os02g46380Os.34151.1.S1_a_at11/112+28260700..28263757purine permease family protein, putative, expressed
LOC_Os02g46390OsAffx.12522.1.S1_at11/112+28264888..28265991hypothetical protein
LOC_Os02g46400OsAffx.24753.1.S1_at11/112+28266351..28266884expressed protein
LOC_Os02g46410OsAffx.2979.1.S1_at11/112+28267529..28268254hypothetical protein
LOC_Os02g46420Os.11599.1.S1_at11/112+28272454..28274001transposon protein, putative, unclassified, expressed
LOC_Os02g46440Os.51804.1.S1_at11/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46440Os.51804.2.S1_x_at10/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46440Os.51804.2.S1_at9/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46450OsAffx.24754.1.S1_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450Os.17548.1.S1_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450OsAffx.24754.1.S1_x_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450Os.16052.1.S1_at3/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46460Os.9303.1.S1_at9/112+28306721..28310326POT family protein, expressed
LOC_Os02g46460OsAffx.24785.1.S1_x_at1/112+28306721..28310326POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51804.2.S1_at--924--10471Chr02:28284015..28284179 (25 bp)
TTAAAAGCAAAGTGCACAGAAACCA
LOC_Os02g46440
Os.51804.2.S1_at--483--10371Chr02:28283943..28283967 (25 bp)
TTTTTTCGCATTCATCTTGTATCCC
LOC_Os02g46440
Os.51804.2.S1_at--123--10371Chr02:28283942..28283966 (25 bp)
TTTTTCGCATTCATCTTGTATCCCT
LOC_Os02g46440
Os.51804.2.S1_at--310--10391Chr02:28283941..28283965 (25 bp)
TTTTCGCATTCATCTTGTATCCCTG
LOC_Os02g46440
Os.51804.2.S1_at--309--10311Chr02:28283940..28283964 (25 bp)
TTTCGCATTCATCTTGTATCCCTGG
LOC_Os02g46440
Os.51804.2.S1_at--559--10591Chr02:28283939..28283963 (25 bp)
TTCGCATTCATCTTGTATCCCTGGA
LOC_Os02g46440
Os.51804.2.S1_at--561--9351Chr02:28283938..28283962 (25 bp)
TCGCATTCATCTTGTATCCCTGGAA
LOC_Os02g46440
Os.51804.2.S1_at--605--6891Chr02:28283925..28283949 (25 bp)
GTATCCCTGGAAAATGAAGTAATCT
LOC_Os02g46440
Os.51804.2.S1_at--740--5331Chr02:28283910..28283934 (25 bp)
GAAGTAATCTAATTGAATGTGGCAT
LOC_Os02g46440
Os.51804.2.S1_at--708--7071Chr02:28283907..28283931 (25 bp)
GTAATCTAATTGAATGTGGCATGTC
NONE
Os.51804.2.S1_at--64--3751Chr02:28283902..28283926 (25 bp)
CTAATTGAATGTGGCATGTCATTGA
NONE
Target Sequence 
TTAAAAGCAAAGTGCACAGAAACCATCCTGATATGGATCTTCCCTGCATGAATACACAAATGAAAGTGTTTTTTTTTTCG
CATTCATCTTGTATCCCTGGAAAATGAAGTAATCTAATTGAATGTGGCATGTCATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51804.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis