Browse Element(s) Details


Os.51814.1.S1_at

Description gb:AK063834.1
DB_XREF= gi:32973852
TID=Os.51814.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-B06, full insert sequence.
FL= gb:AK099340.1 gb:AK063834.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4418011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44140Os.5344.1.S1_at11/116+26630944..26634379Endomembrane protein 70 containing protein, expressed
LOC_Os06g44144Os.8897.1.S1_at11/116+26633843..26634379expressed protein
LOC_Os06g44150Os.11134.1.S1_at11/116+26634666..26638723magnesium transporter CorA-like family protein, putative, expressed
LOC_Os06g44160Os.34316.1.S1_at11/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44160Os.47474.1.S1_x_at11/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44160Os.47474.1.S1_at9/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44170Os.11290.1.S1_at10/116+26649154..26651373NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g44180Os.51814.1.S1_at11/116+26651927..26658234NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g44190NANA6+26659030..26659360hypothetical protein
LOC_Os06g44200Os.9467.1.S1_at11/116+26660041..26663598expressed protein
LOC_Os06g44210Os.46083.1.S1_a_at11/116+26664154..26668595protein phosphatase type-2C, putative, expressed
LOC_Os06g44220Os.55687.1.S1_at1/116+26675856..26676198Uncharacterized protein family protein
LOC_Os06g44230Os.4148.1.S2_a_at11/116+26679172..26689052DNA-directed RNA polymerase 3, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009964biological_processnegative regulation of flavonoid biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016614molecular_functionoxidoreductase activity, acting on CH-OH group of donors
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51814.1.S1_at--34--1151Chr06:26655647..26655671 (25 bp)
AGTCGACGACGAGCCTGGACTGCGT
LOC_Os06g44180
Os.51814.1.S1_at--13--8071Chr06:26652237..26652261 (25 bp)
GGAGACATTGCCGAGCATTCAAGCT
LOC_Os06g44180
Os.51814.1.S1_at--211--3031Chr06:26652139..26652163 (25 bp)
AATGCGCGGTGAGACTTGGTTGCCT
LOC_Os06g44180
Os.51814.1.S1_at--300--1411Chr06:26652128..26652152 (25 bp)
AGACTTGGTTGCCTTGATGCGTCCA
LOC_Os06g44180
Os.51814.1.S1_at--843--8691Chr06:26652114..26652138 (25 bp)
TGATGCGTCCAAGCTTAGTTTACAA
LOC_Os06g44180
Os.51814.1.S1_at--1099--3331Chr06:26652077..26652101 (25 bp)
CATCCTGATTAGTGCAATTTACCAT
LOC_Os06g44180
Os.51814.1.S1_at--99--431Chr06:26652054..26652078 (25 bp)
ATCATTATTGTGTTGGTGTGCCTCT
LOC_Os06g44180
Os.51814.1.S1_at--841--4452Chr06:22691262..22691281 (20 bp)
GCCTCTTCAGGCGTTCTAATTACTA
NONE
Os.51814.1.S1_at--1000--2951Chr06:26651990..26652014 (25 bp)
AATGGAGCATTCCTTGGCGTCATTG
LOC_Os06g44180
Os.51814.1.S1_at--265--8351Chr06:26651975..26651999 (25 bp)
GGCGTCATTGGTTTACAGTCGTGTA
LOC_Os06g44180
Os.51814.1.S1_at--221--7011Chr06:26651953..26651977 (25 bp)
GTACTCGTGTACTACCAGCAATCTG
LOC_Os06g44180
Target Sequence 
AGTCGACGACGAGCCTGGACTGCGTCGTGTCGCCGGTGTCCCGGGACGAGGGCCGCTTCCGGGCGCTCAGGCTGCTGCAG
AGGCTGATGGGGTCGGTGCCGATGGTGCACGTCGACGACGTCTGCGACGCGCTCGTCTTCTGCATGGAGCAGCCGTCCCT
CACCGGCCGGTTCCTCTGCTCCGCCGCGTACCCGACTCTCGACGACATCGTCGAACACTTCGCCGGCAAGTACCCTCACC
TCGACCTCCTCAAAGAAACGGAGACATTGCCGAGCATTCAAGCTCACACTGATAAGCTGGGGGAGCTGGGGTTCAAGTAC
AAGTACGGNATGGAGGAGATACTGGACGAGAGCGTGGAATGCGCGGTGAGACTTGGTTGCCTTGATGCGTCCAAGCTTAG
TTTACAAGGATGATAATATCATCCTGATTAGTGCAATTTACCATCATTATTGTGTTGGTGTGCCTCTTCAGGCGTTCTAA
TTACTATACTTAAAATAAAAAGGAGCAATGGAGCATTCCTTGGCGTCATTGGTTTACAGTCGTGTACTCGTGTACTACCA
GCAATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis