Browse Element(s) Details


Os.51828.1.S1_at

Description gb:AK101972.1
DB_XREF= gi:32987181
TID=Os.51828.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076M10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076M10, full insert sequence.
FL= gb:AK101972.1 gb:AK063920.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0312011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03090OsAffx.28514.4.S1_s_at11/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03090OsAffx.28514.2.S1_x_at10/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03100OsAffx.14521.1.S1_at11/115+1200884..1207700HECT-domain family protein, expressed
LOC_Os05g03110OsAffx.14522.1.S1_at11/115+1209039..1210523PWWP domain containing protein, expressed
LOC_Os05g03120Os.51828.1.S1_at11/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03120Os.51828.2.S1_x_at6/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03120OsAffx.19113.1.A1_at1/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03130OsAffx.14523.1.S1_s_at11/115+1224313..1225030expressed protein
LOC_Os05g03140Os.35209.1.S1_s_at11/115+1232628..1236833senescence-associated family protein, putative, expressed
LOC_Os05g03140Os.53955.1.S1_at11/115+1232628..1236833senescence-associated family protein, putative, expressed
LOC_Os05g03150OsAffx.26707.1.S1_at9/115+1238093..1239939expressed protein
LOC_Os05g03160NANA5+1244665..1245102hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51828.1.S1_at--364--1171Chr05:1222884..1222908 (25 bp)
AGTACACCAACTCCATGATCGGCGG
LOC_Os05g03120
Os.51828.1.S1_at--246--3271Chr05:1222891..1222915 (25 bp)
CAACTCCATGATCGGCGGGAAGCTG
LOC_Os05g03120
Os.51828.1.S1_at--661--5371Chr05:1223002..1223026 (25 bp)
GAAGAAGAGCCCCAAGTGACCATCG
LOC_Os05g03120
Os.51828.1.S1_at--276--531Chr05:1223023..1223047 (25 bp)
ATCGACGCCATGGACAGCTTGGTGT
LOC_Os05g03120
Os.51828.1.S1_at--512--2151Chr05:1223036..1223060 (25 bp)
ACAGCTTGGTGTGGTGTGTGTACTA
LOC_Os05g03120
Os.51828.1.S1_at--261--5471Chr05:1223065..1223089 (25 bp)
GAACTGAAACTGACTAGCTAGGCTG
LOC_Os05g03120
Os.51828.1.S1_at--204--4871Chr05:1223081..1223105 (25 bp)
GCTAGGCTGAGCTGATCTGATCACG
LOC_Os05g03120
Os.51828.1.S1_at--307--4171Chr05:1223104..1223128 (25 bp)
CGCCATGGATGGGTTTAGCTGCAAA
LOC_Os05g03120
Os.51828.1.S1_at--1090--6811Chr05:1223116..1223140 (25 bp)
GTTTAGCTGCAAACACTGTGAATCA
LOC_Os05g03120
Os.51828.1.S1_at--912--7871Chr05:1223177..1223201 (25 bp)
GGTTTTGCTGCTGTGGTCGCAGTAA
LOC_Os05g03120
Os.51828.1.S1_at--431--5931Chr05:1223244..1223268 (25 bp)
GAGCATCTACATTTTGGGCTGCATG
LOC_Os05g03120
Target Sequence 
AGTACACCAACTCCATGATCGGCGGGAAGCTGGCGAGCTCGCCGTTCTCCGACGAGCCGGAGGAGGAGTCGCCGAAGCGG
CGCAACAGCGGCGTGCTCCGGCGGATGAGCGGGCTGTGGAAGAAGAGCCCCAAGTGACCATCGACGCCATGGACAGCTTG
GTGTGGTGTGTGTACTAGAAAGAACTGAAACTGACTAGCTAGGCTGAGCTGATCTGATCACGCCATGGATGGGTTTAGCT
GCAAACACTGTGAATCAAAGCTAGTTAAGTTAATTACTACTGGTTGGTTAGTTGGTTTTGCTGCTGTGGTCGCAGTAAAA
AAAGAATGTTAAGAACTCTTGTAATGATGTTGGAGATGAGGAGCATCTACATTTTGGGCTGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis