Browse Element(s) Details


Os.51839.1.S1_x_at

Description gb:AK063994.1
DB_XREF= gi:32974012
TID=Os.51839.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51839 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033020I01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-E10, full insert sequence.
FL= gb:AK063994.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0197011/11SWIRM domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01930OsAffx.13617.1.S1_x_at11/114+576481..578063exostosin family protein, putative
LOC_Os04g01930OsAffx.13617.1.S1_at11/114+576481..578063exostosin family protein, putative
LOC_Os04g01930OsAffx.27499.3.S1_x_at1/114+576481..578063exostosin family protein, putative
LOC_Os04g01940OsAffx.25829.1.S1_at11/114+579506..582256hypothetical protein
LOC_Os04g01950Os.51275.1.S1_at11/114+583902..584993expressed protein
LOC_Os04g01960Os.52971.1.S1_at9/114+590515..591421expressed protein
LOC_Os04g01970Os.51839.1.S1_x_at11/114+592840..599416SWIRM domain containing protein, expressed
LOC_Os04g01970Os.49437.1.S1_at1/114+592840..599416SWIRM domain containing protein, expressed
LOC_Os04g01980OsAffx.25830.1.S1_at11/114+600715..603239hypothetical protein
LOC_Os04g01990Os.49158.1.S1_at11/114+604329..606886pentatricopeptide, putative, expressed
LOC_Os04g02000Os.7584.1.S1_at11/114+608054..613392Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os04g02010OsAffx.25831.1.S1_at9/114+617964..618778hypothetical protein
LOC_Os04g02010OsAffx.25831.1.S1_x_at9/114+617964..618778hypothetical protein
LOC_Os04g02020OsAffx.13618.1.S1_at11/114+623838..624134hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006338biological_processchromatin remodeling
GO:0016514cellular_componentSWI/SNF complex
GO:0016585cellular_componentchromatin remodeling complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51839.1.S1_x_at--403--3411Chr04:598677..598701 (25 bp)
CAGCAGCTGCTGTGAAGTCGAAACT
LOC_Os04g01970
Os.51839.1.S1_x_at--399--1651Chr04:598731..598755 (25 bp)
AGCGACTAGCTGCACTTGTGATTGA
LOC_Os04g01970
Os.51839.1.S1_x_at--276--1271Chr04:598946..598970 (25 bp)
AGATAATTTGGTCCTGCGAGCGAGA
LOC_Os04g01970
Os.51839.1.S1_x_at--17--6471Chr04:599018..599042 (25 bp)
GATAATCGCTTCTCGGATGGCGGCA
LOC_Os04g01970
Os.51839.1.S1_x_at--418--6431Chr04:599125..599149 (25 bp)
GATCTTGAGGCCTACTTCGCACGTG
LOC_Os04g01970
Os.51839.1.S1_x_at--262--10631Chr04:599140..599164 (25 bp)
TTCGCACGTGCTGATGACCTAATGT
LOC_Os04g01970
Os.51839.1.S1_x_at--913--7571Chr04:599197..599221 (25 bp)
GGGCTGGCTTTTGTAGTTGTGCTAA
LOC_Os04g01970
Os.51839.1.S1_x_at--705--3031Chr04:599220..599244 (25 bp)
AATCCAGTAATCCACCATGACCATG
LOC_Os04g01970
Os.51839.1.S1_x_at--378--4651Chr04:599288..599312 (25 bp)
GCGTAATATTATTGCCTCACCTAGC
LOC_Os04g01970
Os.51839.1.S1_x_at--399--6951Chr04:599333..599357 (25 bp)
GTAGAACTGCTGTCACCTGGAATGT
LOC_Os04g01970
Os.51839.1.S1_x_at--640--1271Chr04:599380..599404 (25 bp)
AGATCTAGGTTTTGGTGCTCCTGTC
LOC_Os04g01970
Target Sequence 
CAGCAGCTGCTGTGAAGTCGAAACTCCTTGCAAAGCATGAGGAATATCAAATCCAGCGACTAGCTGCACTTGTGATTGAT
AAACAGCTCCACAAGATGCAAGCGAAAATGTCAGTTTTCACTGAAGCAGATAATTTGGTCCTGCGAGCGAGAGAACACAC
CGAGAGAACTCGGAAGAAGCTTCTGATGGAGAGGAGCGCGATAATCGCTTCTCGGATGGCGGCATCGCCACCCAGACCAA
ACCACCAACCTGGGATGCCTGGGAGCAGATTGCCGGTAGGGTATGGTGTGAATCAGCATCTGAGGCGATCTTGAGGCCTA
CTTCGCACGTGCTGATGACCTAATGTCCACCTTCCAAGAAGGATAGATATAGACTGTAGGGCTGGCTTTTGTAGTTGTGC
TAATCCAGTAATCCACCATGACCATGTGCAATATCCCATGTTAGTATGTTACAGGCTTAATATTTTGAAGCGTAATATTA
TTGCCTCACCTAGCTTTTAGTTACCCCCTGGTAGTGTAGAACTGCTGTCACCTGGAATGTAGTATGTATTATAATGGTTT
CAAGATCTAGGTTTTGGTGCTCCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51839.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis