Browse Element(s) Details


Os.51865.1.S2_at

Description gb:AK107445.1
DB_XREF= gi:32992654
TID=Os.51865.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51865 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-128-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-128-B10, full insert sequence.
FL= gb:AK107445.1 gb:AK101159.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4462011/11Hus1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44550Os.53502.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44550OsAffx.4086.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44560Os.18634.1.S1_at10/114+26156643..26160715expressed protein
LOC_Os04g44570Os.55453.1.S1_at11/114+26161182..26162454MIP family channel proteins containing protein, expressed
LOC_Os04g44580OsAffx.26461.1.S1_at11/114+26162906..26166902expressed protein
LOC_Os04g44590Os.26349.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44590OsAffx.26462.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44600Os.20306.1.S1_at11/114+26173245..26173981expressed protein
LOC_Os04g44610Os.17440.1.S1_at11/114+26176829..26182579ABC-2 type transporter family protein, expressed
LOC_Os04g44620Os.51865.1.S2_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44620Os.51865.2.S1_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44620Os.51865.1.S1_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44630OsAffx.26147.4.S1_s_at11/114+26188695..26193292transposon protein, putative, unclassified
LOC_Os04g44630OsAffx.26147.2.S1_x_at9/114+26188695..26193292transposon protein, putative, unclassified
LOC_Os04g44640OsAffx.28220.1.S1_s_at10/114+26193723..26204743Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os04g44640Os.44572.1.S1_x_at7/114+26193723..26204743Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51865.1.S2_at--1022--752Chr09:2009926..2009945 (20 bp)
ATGTCGAAGAGCTCGAACACCTCGC
NONE
Os.51865.1.S2_at--485--2171Chr04:26179530..26179554 (25 bp)
ACACCTCGCTGCTGGGCTGGTGGAT
LOC_Os04g44620
Os.51865.1.S2_at--941--7511Chr04:26179511..26179535 (25 bp)
GTGGATGGAGGCGATCACCGTCCTC
LOC_Os04g44620
Os.51865.1.S2_at--843--1591Chr04:26179437..26179461 (25 bp)
AGCTGCGCGCATGATCAAGCCGGCA
LOC_Os04g44620
Os.51865.1.S2_at--56--9671Chr04:26179376..26179400 (25 bp)
TCAGCTCAGCTGTGACTGGATGCAG
LOC_Os04g44620
Os.51865.1.S2_at--1003--951Chr04:26179349..26179373 (25 bp)
AGGACGCGTACCTGTCGAGGCCGCT
LOC_Os04g44620
Os.51865.1.S2_at--1097--5051Chr04:26179124..26179148 (25 bp)
GCAGCATCGCCGAGTACCCGATCGT
LOC_Os04g44620
Os.51865.1.S2_at--985--7091Chr04:26179089..26179113 (25 bp)
GTCAGCGTCCCGATCAAGTTGTCGT
LOC_Os04g44620
Os.51865.1.S2_at--614--2793Chr09:18044773..18044792 (20 bp)
AAGTTGTCGTCCTGCGTCACGTACG
NONE
Os.51865.1.S2_at--938--9831Chr04:26179030..26179054 (25 bp)
TAAACCTCGTGTTTCACCGCTAAAT
LOC_Os04g44620
Os.51865.1.S2_at--252--10511Chr04:26179018..26179042 (25 bp)
TTCACCGCTAAATGCACTTGCTTTG
LOC_Os04g44620
Target Sequence 
ATGTCGAAGAGCTCGAACACCTCGCTGCTGGGCTGGTGGATGGAGGCGATCACCGTCCTCCCGTCCCTGGCCAGCCCCCG
GAGCGTCTGCGTCACGAAGAACGCCGACGAGCTGCGCGCATGATCAAGCCGGCATCACATCGCCGCGGTCAGTCCAGCGC
ACACCATCAGTCAGCTCAGCTGTGACTGGATGCAGGGAGGACGCGTACCTGTCGAGGCCGCTGGTGGGCTCGTCGAGGAA
GAGGAGGCGGGGGCGCATGAGGAGCTCGAGGGCGATGCTGACGCGGCGCTTCTCGCCGCCGCTGACGCCGCGGAGGTGCC
AGTTGCCGATGACGGTGTCGGCGCAGTCCTGGAGGCCCATCTCCACGATGGTGCCCTCCACCAGGGCGCGCTTGTCCTCC
CGGGGCATCTTGTCCGGCAGCCGCAGCATCGCCGAGTACCCGATCGTCTCCCGCACCGTCAGCGTCCCGATCAAGTTGTC
GTCCTGCGTCACGTACGCCTAAAAAAAAACCCTCCGTAAACCTCGTGTTTCACCGCTAAATGCACTTGCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51865.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis