Browse Element(s) Details


Os.51925.1.S1_at

Description gb:AK064291.1
DB_XREF= gi:32974309
TID=Os.51925.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51925 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-H06, full insert sequence.
FL= gb:AK064291.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g473901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47340OsAffx.29724.3.S1_x_at11/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.6.S1_x_at6/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.1.S1_x_at6/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.2.S1_x_at3/112+28897987..28903844hypothetical protein
LOC_Os02g47350Os.51095.1.A1_at9/112+28908875..28911021oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g47360OsAffx.24765.1.S1_at11/112+28911931..28914888LAGLIDADG DNA endonuclease family protein, expressed
LOC_Os02g47370Os.55550.1.S1_at10/112+28915307..28915923expressed protein
LOC_Os02g47380Os.17546.2.S1_x_at1/112+28917818..28921944retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47390Os.18947.1.S1_at11/112+28922837..28926136expressed protein
LOC_Os02g47390Os.54282.1.S1_x_at2/112+28922837..28926136expressed protein
LOC_Os02g47390Os.51925.1.S1_at1/112+28922837..28926136expressed protein
LOC_Os02g47400Os.52664.1.S1_at11/112+28929567..28933388pectinacetylesterase family protein, putative, expressed
LOC_Os02g47410Os.17381.1.S1_at11/112+28933917..28942098Protein kinase domain containing protein, expressed
LOC_Os02g47420Os.18687.1.S1_a_at11/112+28947167..28953256pollen-specific kinase partner protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51925.1.S1_at--46--3271Chr05:9040461..9040485 (25 bp)
CAACTGTCATCGTCAACTCTTTGTT
NONE
Os.51925.1.S1_at--83--2011Chr05:9040446..9040470 (25 bp)
ACTCTTTGTTACTTTGATCCCATCA
NONE
Os.51925.1.S1_at--694--6371Chr05:9040431..9040455 (25 bp)
GATCCCATCAAGTCAGGAGGTGCCC
NONE
Os.51925.1.S1_at--514--835Chr08:5930942..5930961 (20 bp)
ATGGATATTCGGCTGTTGTGTACAC
NONE
Os.51925.1.S1_at--935--9811Chr05:9040348..9040372 (25 bp)
TAACACCATCCTGATGTCGTTGCTG
NONE
Os.51925.1.S1_at--303--7211Chr05:9040333..9040357 (25 bp)
GTCGTTGCTGATCCAAGCGACACGA
NONE
Os.51925.1.S1_at--784--2671Chr05:9040319..9040343 (25 bp)
AAGCGACACGAGATCTATGCATGTT
NONE
Os.51925.1.S1_at--237--8411Chr05:9040162..9040186 (25 bp)
GGCGCCTAGATATATATCCACAATC
NONE
Os.51925.1.S1_at--1093--1031Chr05:9040066..9040090 (25 bp)
AGGTGCTCTGTAGGCCTAAACCTGT
NONE
Os.51925.1.S1_at--694--5331Chr05:9040000..9040024 (25 bp)
GAAGACCACTTATCCAAGTTTAGAT
NONE
Os.51925.1.S1_at--541--2591Chr05:9039969..9039993 (25 bp)
AACGACAGGCTATGGAGCGCACATA
NONE
Target Sequence 
CAACTGTCATCGTCAACTCTTTGTTACTTTGATCCCATCAAGTCAGGAGGTGCCCAGCCATGGATATTCGGCTGTTGTGT
ACACCAACTGACTTGACCAACTCCTCTTCCCTTTAACACCATCCTGATGTCGTTGCTGATCCAAGCGACACGAGATCTAT
GCATGTTGAAGATCAATCCATCTACTCCACCACGTTGCTCAAGACTGATGAGGCGGAGCGACGAGGGTGGGCGGAGCCTA
TATGAAGGCTACATCACCAACACCGGCGCACGGACCGATGAGGCCGCGGATGCGTTGCCGGCGCCTAGATATATATCCAC
AATCTTCACCAACATTCATCGTGCATGGAGAACGTGAAGCGAAGACGACGAGACGACCACATGCAGCTTAATCGGAGGTG
CTCTGTAGGCCTAAACCTGTGGCAGTAATTAACTAGGAGTCTTTCGAGACCCCAGGAATTAGAAGACCACTTATCCAAGT
TTAGATTTGTCCAACGACAGGCTATGGAGCGCACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51925.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis