Browse Element(s) Details


Os.51943.1.S1_at

Description gb:AK064348.1
DB_XREF= gi:32974366
TID=Os.51943.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-A01, full insert sequence.
FL= gb:AK064348.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3872011/11Lung seven transmembrane receptor family protein, expressed
LOC_Os09g179901/11Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38690OsAffx.27228.1.S1_at11/115+22615360..22616469expressed protein
LOC_Os05g38700OsAffx.27229.1.S1_at11/115+22618262..22619611hypothetical protein
LOC_Os05g38710Os.28320.1.S1_at11/115+22625566..22630697lipin, N-terminal conserved region family protein, expressed
LOC_Os05g38710OsAffx.11471.1.S1_at1/115+22625566..22630697lipin, N-terminal conserved region family protein, expressed
LOC_Os05g38720Os.51943.1.S1_at11/115+22636077..22637822Lung seven transmembrane receptor family protein, expressed
LOC_Os05g38730Os.35152.1.S1_at11/115+22642424..22650828SAC3/GANP family protein, expressed
LOC_Os05g38740Os.12348.5.S1_x_at10/115+22653508..22654097Histone H4, putative, expressed
LOC_Os05g38740Os.12348.5.S1_at9/115+22653508..22654097Histone H4, putative, expressed
LOC_Os05g38750NANA5+22656487..22656882hypothetical protein
LOC_Os05g38760OsAffx.15015.1.S1_at11/115+22660704..22661267Histone H4, putative
LOC_Os05g38770Os.49683.1.S1_at11/115+22661891..22664464Serine/threonine-protein kinase RLCKVII, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51943.1.S1_at--666--2931Chr05:22637243..22637267 (25 bp)
AAGGCAGCGCGGACTCTATCGAAGC
LOC_Os05g38720
Os.51943.1.S1_at--917--2011Chr05:22637318..22637342 (25 bp)
ACTAGGATCGTCGTGTATGCGCTCA
LOC_Os05g38720
Os.51943.1.S1_at--709--10131Chr05:22637333..22637357 (25 bp)
TATGCGCTCAAGACCATTGCCAGTT
LOC_Os05g38720
Os.51943.1.S1_at--203--51Chr05:22637348..22637372 (25 bp)
ATTGCCAGTTACCAGTTCCGGTGGG
LOC_Os05g38720
Os.51943.1.S1_at--454--1751Chr05:22637412..22637436 (25 bp)
ACCTCTTCATGTTCTACACATTCAG
LOC_Os05g38720
Os.51943.1.S1_at--791--9851Chr05:22637426..22637450 (25 bp)
TACACATTCAGACCGGCCGAGAGGA
LOC_Os05g38720
Os.51943.1.S1_at--4--8071Chr05:22637448..22637472 (25 bp)
GGAGCAGATACTTTTCGTTCGACGA
LOC_Os05g38720
Os.51943.1.S1_at--659--4071Chr05:22637518..22637542 (25 bp)
CGAGCTTTGATGAGTTGCGGCGATT
LOC_Os05g38720
Os.51943.1.S1_at--1118--3051Chr05:22637574..22637598 (25 bp)
AATCTGCTCACCTTGTTCATTTGAT
LOC_Os05g38720
Os.51943.1.S1_at--810--6411Chr05:22637596..22637620 (25 bp)
GATCTCTTCTCCCTGTGAGATTTAG
LOC_Os05g38720
Os.51943.1.S1_at--1033--7052Chr05:22637676..22637700 (25 bp)
GTAAGATTGTTTTGTTCCTCTCTCC
LOC_Os05g38720
Target Sequence 
AAGGCAGCGCGGACTCTATCGAAGCTCACCCTGTTCCGGCAATTCTACATTGTGGTGATCGGTTACCTATACTTCACTAG
GATCGTCGTGTATGCGCTCAAGACCATTGCCAGTTACCAGTTCCGGTGGGTGAGCGTCTTGGCCGAGGAGGTGGCCACAT
TGGCATTCTACCTCTTCATGTTCTACACATTCAGACCGGCCGAGAGGAGCAGATACTTTTCGTTCGACGAANATNAGGAG
GAGGCTGCTGAGATGGTGCTCCGGGAAGAGGAATTCGAGCTTTGATGAGTTGCGGCGATTCGCAGCAATNGCGGCTGCCT
GGCAATTGGAAAATCTGCTCACCTTGTTCATTTGATCTCTTCTCCCTGTGAGATTTAGCACACCATACAAATTTCAGGAA
TATAGCTCATTGTCTTGTATTTACTACAGGGATGTAAGATTGTTTTGTTCCTCTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51943.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis