Browse Element(s) Details


Os.52003.1.S1_at

Description gb:AK064518.1
DB_XREF= gi:32974536
TID=Os.52003.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52003 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-F09, full insert sequence.
FL= gb:AK064518.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1078411/112-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10760OsAffx.19599.1.S1_at8/1112+5785004..5785551hypothetical protein
LOC_Os12g10760OsAffx.19599.1.S1_x_at8/1112+5785004..5785551hypothetical protein
LOC_Os12g10760OsAffx.24646.1.S1_at1/1112+5785004..5785551hypothetical protein
LOC_Os12g10770OsAffx.29203.3.A1_x_at1/1112+5792003..5796844transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g10784Os.52003.1.S1_at11/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784Os.11494.1.S1_a_at10/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784OsAffx.19600.1.S1_x_at7/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784OsAffx.19600.1.S1_at6/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10800OsAffx.31552.2.S1_at5/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.31552.1.S1_x_at5/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.11270.1.S1_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.31552.3.S1_x_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.11270.1.S1_x_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.22940.2.S1_at2/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10810Os.54088.1.S1_at11/1112+5816151..5818136expressed protein
LOC_Os12g10810OsAffx.19601.1.S1_at1/1112+5816151..5818136expressed protein
LOC_Os12g10820OsAffx.31689.1.S1_at11/1112+5821581..5828140expressed protein
LOC_Os12g10830OsAffx.19601.1.S1_at1/1112+5828930..5842420retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005737cellular_componentcytoplasm
GO:0008676molecular_function3-deoxy-8-phosphooctulonate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52003.1.S1_at--987--6951Chr12:5804281..5804305 (25 bp)
GTAGCTGTAGGTTAATTGCCATGCA
LOC_Os12g10784
Os.52003.1.S1_at--146--1551Chr12:5804340..5804364 (25 bp)
AGCTTCAGACCTCCTTATTTAGGTT
LOC_Os12g10784
Os.52003.1.S1_at--80--7991Chr12:5804385..5804409 (25 bp)
GGATGTTTAGCCAGCACCACCAGCT
LOC_Os12g10784
Os.52003.1.S1_at--472--531Chr12:5804417..5804441 (25 bp)
ATCGCATGCCCAGTTTTAGCATTGT
LOC_Os12g10784
Os.52003.1.S1_at--908--211Chr12:5804452..5804476 (25 bp)
ATATTTATTTTTGCACCCTCTCCAA
LOC_Os12g10784
Os.52003.1.S1_at--445--5211Chr12:5804511..5804535 (25 bp)
GAATTCTGTTTTCATTCCGACACAG
LOC_Os12g10784
Os.52003.1.S1_at--930--5931Chr12:5804625..5804648 (24 bp)
GAGCAGAACTGCGTAATCTACCTGA
LOC_Os12g10784
Os.52003.1.S1_at--256--3071Chr12:5804638..5804662 (25 bp)
AATCTACCTGATGACTTCTGTGTTG
LOC_Os12g10784
Os.52003.1.S1_at--1028--2051Chr12:5804651..5804675 (25 bp)
ACTTCTGTGTTGATTTGTCCTGCTT
LOC_Os12g10784
Os.52003.1.S1_at--867--10391Chr12:5804763..5804787 (25 bp)
TTATTCTCTTTTCAGTATTCACCAG
LOC_Os12g10784
Os.52003.1.S1_at--437--7931Chr12:5804811..5804835 (25 bp)
GGATTCTGTACATTCCTAACACCAA
LOC_Os12g10784
Target Sequence 
GTAGCTGTAGGTTAATTGCCATGCAAATAAGCAATAGGGCCACTTAATGGATAAGCACAAGCTTCAGACCTCCTTATTTA
GGTTCTGAAGGAAAACAAACAACTGGATGTTTAGCCAGCACCACCAGCTCCCTTTCATCGCATGCCCAGTTTTAGCATTG
TCTGTTTATTAATATTTATTTTTGCACCCTCTCCAAAGAAAATTATGTTTTTGATTGCTTCATGACGGTTGAATTCTGTT
TTCATTCCGACACAGATGATCTAATTGTTGATCCAAGGAATTTTGAGTGGCTGAGAGAAGCTAATTGTCCAGTTGTAAGT
GTTAGCACTTTATTGTTGTGCAGGAGCAGAACTGCGTAATCTACCTGATGACTTCTGTGTTGATTTGTCCTGCTTGCTTC
TGATTGATGAAATTGGCTGATGGAATAATATTTGGAAAAATCAACCTAGGATTTTACAAGGAACCTATGTTTAGTAGTTT
TATTATTCTCTTTTCAGTATTCACCAGAATTCCTTGAGGAATGTATGTTTGGATTCTGTACATTCCTAACACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis