Browse Element(s) Details


Os.52013.1.S1_at

Description gb:AK064530.1
DB_XREF= gi:32974548
TID=Os.52013.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52013 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-H02, full insert sequence.
FL= gb:AK064530.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2166010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21630OsAffx.2922.1.S1_at1/119+13098443..13102496retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21640OsAffx.22947.1.S1_x_at11/119+13103635..13110007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21640OsAffx.22947.2.S1_x_at7/119+13103635..13110007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21640OsAffx.22947.3.S1_x_at5/119+13103635..13110007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21640OsAffx.22947.5.S1_x_at3/119+13103635..13110007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21650NANA9+13112121..13113376retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21660Os.52013.1.S1_at10/119+13115491..13117743expressed protein
LOC_Os09g21670OsAffx.6359.1.S1_s_at11/119+13125139..13128804expressed protein
LOC_Os09g21680Os.14919.1.S1_at2/119+13132111..13136837transposon protein, putative, Mutator sub-class
LOC_Os09g21680Os.56216.1.S1_at1/119+13132111..13136837transposon protein, putative, Mutator sub-class
LOC_Os09g21690OsAffx.17832.1.S1_at10/119+13139059..13141656expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52013.1.S1_at--1099--2551Chr09:13116027..13116051 (25 bp)
AACTGTGAAACACCTTACGGCTGTT
LOC_Os09g21660
Os.52013.1.S1_at--999--8931Chr09:13115959..13115983 (25 bp)
TGACACTTGAATTCCTGCCAAAGCC
LOC_Os09g21660
Os.52013.1.S1_at--728--4371Chr09:13115897..13115921 (25 bp)
CCAAGTTATTGGTGCACGTTTTCTA
LOC_Os09g21660
Os.52013.1.S1_at--416--5091Chr09:13115884..13115908 (25 bp)
GCACGTTTTCTACTTGTTTCTTGTT
LOC_Os09g21660
Os.52013.1.S1_at--844--7851Chr09:13115715..13115739 (25 bp)
GGTTGACTGTACTGGCTTTGGAGCA
LOC_Os09g21660
Os.52013.1.S1_at--661--1951Chr09:13115705..13115729 (25 bp)
ACTGGCTTTGGAGCATCACTCAATG
LOC_Os09g21660
Os.52013.1.S1_at--1161--6171Chr09:13115661..13115685 (25 bp)
GAGGAACTGCATTTACTTTGTAAGA
LOC_Os09g21660
Os.52013.1.S1_at--210--6191NONE
GAGGAATTACCACCATACACAATCC
NONE
Os.52013.1.S1_at--1065--6411Chr09:13115567..13115591 (25 bp)
GATCTACCAGATAACATTGCACTTG
LOC_Os09g21660
Os.52013.1.S1_at--127--10751Chr09:13115551..13115575 (25 bp)
TTGCACTTGAGATTGTGATGCCTCC
LOC_Os09g21660
Os.52013.1.S1_at--982--8851Chr09:13115536..13115560 (25 bp)
TGATGCCTCCATCTTGAATCCTTCA
LOC_Os09g21660
Target Sequence 
AACTGTGAAACACCTTACGGCTGTTGGGGGGAGATTCCATGCATATTTAAATCAGGATAAGGCAATTTTGACACTTGAAT
TCCTGCCAAAGCCAACATTTACAACTACGCCAGTTAAGGATGCACCAGATCCAAGTTATTGGTGCACGTTTTCTACTTGT
TTCTTGTTAGAATCAGGTGGAGAGTTGTTCACGTTGTCATTTAAACATCCAATTGAATGTGTTGATAAGGTTATGCAAAT
TGAAGTTCATAAACTCAATTTATCTCAAAGAATTTGGATGAAAGTTAGCACAATTGATAACAAGGCATTTTTGGTTGACT
GTACTGGCTTTGGAGCATCACTCAATGCAGAAGATGTTGGATTGAAGAGGAACTGCATTTACTTTGTAAGACCTAAAGAT
AAGGGATTATATGTTTATAACATGGAACGAGGAATTACCACCATACACAATCCAGGGGAAGATCTACCAGATAACATTGC
ACTTGAGATTGTGATGCCTCCATCTTGAATCCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis