Browse Element(s) Details


Os.52026.2.S1_at

Description gb:AK064559.1
DB_XREF= gi:32974577
TID=Os.52026.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-C08, full insert sequence.
FL= gb:AK064559.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g408309/11Pumilio-family RNA binding repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40800NANA8+25675039..25681203retrotransposon protein, putative, unclassified
LOC_Os08g40810NANA8+25681831..25682766retrotransposon protein, putative, unclassified
LOC_Os08g40820Os.53388.2.S1_at11/118+25684918..25690623expressed protein
LOC_Os08g40820Os.53388.1.S1_x_at11/118+25684918..25690623expressed protein
LOC_Os08g40830Os.52026.3.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.10417.1.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.52026.2.S1_at9/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40840OsAffx.17444.1.S1_at11/118+25712545..25715139Exo70 exocyst complex subunit family protein
LOC_Os08g40850Os.14971.1.S1_at11/118+25715842..25720263Mitochondrial carrier protein, expressed
LOC_Os08g40860Os.37268.1.S1_at11/118+25720886..25724289pseudouridine synthase family protein, putative, expressed
LOC_Os08g40870OsAffx.29613.1.S1_at11/118+25724317..25725498pentatricopeptide, putative, expressed
LOC_Os08g40880Os.10684.1.S1_at11/118+25726174..25732019oligouridylate-binding protein, putative, expressed
LOC_Os08g40890Os.49085.1.S2_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40890Os.49085.1.S1_at11/118+25734243..25737434spermidine synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52026.2.S1_at--191--2711NONE
AAGCTATCCAGCTGCGGTTGCCTAA
NONE
Os.52026.2.S1_at--785--4651NONE
GCGGTTGCCTAAAAAATTGCCTAGT
NONE
Os.52026.2.S1_at--467--3151Chr08:25701544..25701568 (25 bp)
AATTGCCTAGTCTTAGTCCTGTAAT
LOC_Os08g40830
Os.52026.2.S1_at--87--6531Chr08:25701576..25701600 (25 bp)
GATTTGCATCGCTGATTTACTGTAG
LOC_Os08g40830
Os.52026.2.S1_at--1112--9911Chr08:25701593..25701617 (25 bp)
TACTGTAGCTGGTGATTATTGACTT
LOC_Os08g40830
Os.52026.2.S1_at--930--6131Chr08:25701636..25701660 (25 bp)
GAGGGTTTAATTACCATGGTGATTA
LOC_Os08g40830
Os.52026.2.S1_at--174--8791Chr08:25701661..25701685 (25 bp)
TGTTCTTGGGTGTGATTCTTCTGTC
LOC_Os08g40830
Os.52026.2.S1_at--264--10571Chr08:25701676..25701700 (25 bp)
TTCTTCTGTCAGTGAGAGGAAACTT
LOC_Os08g40830
Os.52026.2.S1_at--855--9891Chr08:25701749..25701773 (25 bp)
TACTGGTTAATGTTTTTCCTTGAAG
LOC_Os08g40830
Os.52026.2.S1_at--663--6511Chr08:25701798..25701822 (25 bp)
GATTTTGTTAGGTGCTGGTCTGTTT
LOC_Os08g40830
Os.52026.2.S1_at--563--4711Chr08:25701811..25701835 (25 bp)
GCTGGTCTGTTTTAGGTTGAATGAA
LOC_Os08g40830
Target Sequence 
AAGCTATCCAGCTGCGGTTGCCTAAAAAATTGCCTAGTCTTAGTCCTGTAATGAAGAATGATTTGCATCGCTGATTTACT
GTAGCTGGTGATTATTGACTTGAGGAGAAGTATTAGTTAGAGGGTTTAATTACCATGGTGATTATGTTCTTGGGTGTGAT
TCTTCTGTCAGTGAGAGGAAACTTCTGATATTGTTTTGTAAGTAAGTATGAGGTTAACAGGTAAAAAGGGTGTACTGGTT
AATGTTTTTCCTTGAAGAGGGGAGTGAGTACTGTTTTAGTTGATTTTGTTAGGTGCTGGTCTGTTTTAGGTTGAATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52026.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis