Browse Element(s) Details


Os.52085.1.S1_at

Description gb:AK064686.1
DB_XREF= gi:32974704
TID=Os.52085.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52085 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D11, full insert sequence.
FL= gb:AK064686.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3058011/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30530Os.8428.1.S1_at11/115+17612112..1761479840S ribosomal protein S4, putative, expressed
LOC_Os05g30530Os.47405.1.A1_s_at11/115+17612112..1761479840S ribosomal protein S4, putative, expressed
LOC_Os05g30530Os.40563.1.S1_x_at1/115+17612112..1761479840S ribosomal protein S4, putative, expressed
LOC_Os05g30540Os.47130.4.A1_x_at4/115+17617793..17619303retrotransposon protein, putative, unclassified
LOC_Os05g30540OsAffx.28164.2.S1_at1/115+17617793..17619303retrotransposon protein, putative, unclassified
LOC_Os05g30550Os.28943.1.S1_x_at4/115+17620169..17623346retrotransposon protein, putative, unclassified
LOC_Os05g30560OsAffx.10711.1.S1_x_at2/115+17624022..17626922retrotransposon protein, putative, unclassified
LOC_Os05g30560Os.27544.1.A1_at1/115+17624022..17626922retrotransposon protein, putative, unclassified
LOC_Os05g30560OsAffx.10711.1.S1_at1/115+17624022..17626922retrotransposon protein, putative, unclassified
LOC_Os05g30570Os.50845.1.S1_at11/115+17633492..17635002heavy metal-associated domain containing protein, expressed
LOC_Os05g30580Os.52085.1.S1_at11/115+17639694..17642149Subtilisin N-terminal Region family protein, expressed
LOC_Os05g30590NANA5+17643967..17645306hAT family dimerisation domain containing protein
LOC_Os05g30600OsAffx.27087.1.S1_at11/115+17645635..17646478hypothetical protein
LOC_Os05g30610Os.28346.3.S1_x_at8/115+17649421..17655139retrotransposon protein, putative, unclassified
LOC_Os05g30620Os.57089.1.S1_at4/115+17657038..17657532hypothetical protein
LOC_Os05g30630OsAffx.14890.1.S1_at11/115+17661375..17661829hypothetical protein
LOC_Os05g30630OsAffx.15866.1.S1_x_at1/115+17661375..17661829hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005576cellular_componentextracellular region
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52085.1.S1_at--683--4891Chr05:17642043..17642067 (25 bp)
GCTTAATTAGTTGCCGCCTTCGGTT
LOC_Os05g30580
Os.52085.1.S1_at--165--131Chr05:17642048..17642072 (25 bp)
ATTAGTTGCCGCCTTCGGTTTGATC
LOC_Os05g30580
Os.52085.1.S1_at--347--10051Chr05:17642050..17642074 (25 bp)
TAGTTGCCGCCTTCGGTTTGATCAA
LOC_Os05g30580
Os.52085.1.S1_at--207--9171Chr05:17642054..17642078 (25 bp)
TGCCGCCTTCGGTTTGATCAACACT
LOC_Os05g30580
Os.52085.1.S1_at--575--4171Chr05:17642057..17642081 (25 bp)
CGCCTTCGGTTTGATCAACACTACA
LOC_Os05g30580
Os.52085.1.S1_at--1098--9691Chr05:17642071..17642095 (25 bp)
TCAACACTACATTTATATACTATCG
LOC_Os05g30580
Os.52085.1.S1_at--122--10191Chr05:17642086..17642110 (25 bp)
TATACTATCGTCAATTAACCCATGT
LOC_Os05g30580
Os.52085.1.S1_at--837--10151Chr05:17642091..17642115 (25 bp)
TATCGTCAATTAACCCATGTCATCG
LOC_Os05g30580
Os.52085.1.S1_at--1086--3151Chr05:17642097..17642121 (25 bp)
CAATTAACCCATGTCATCGATATTT
LOC_Os05g30580
Os.52085.1.S1_at--495--2611Chr05:17642102..17642126 (25 bp)
AACCCATGTCATCGATATTTATACA
LOC_Os05g30580
Os.52085.1.S1_at--522--7131Chr05:17642109..17642133 (25 bp)
GTCATCGATATTTATACATTTCAAG
LOC_Os05g30580
Target Sequence 
GCTTAATTAGTTGCCGCCTTCGGTTTGATCAACACTACATTTATATACTATCGTCAATTAACCCATGTCATCGATATTTA
TACATTTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52085.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis