Browse Element(s) Details


Os.52102.1.A1_at

Description gb:AK064722.1
DB_XREF= gi:32974740
TID=Os.52102.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52102 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-F06, full insert sequence.
FL= gb:AK064722.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4244411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42420Os.8504.1.S1_at10/114+24883223..24888558nodulin, putative, expressed
LOC_Os04g42430Os.14996.2.S1_a_at11/114+24891950..24896092EF hand family protein, expressed
LOC_Os04g42444Os.54519.1.S1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444Os.52102.1.A1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_s_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_at7/114+24899143..24903598expressed protein
LOC_Os04g42460OsAffx.26442.3.S1_x_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.3.S1_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.1.S1_x_at3/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.2.S1_x_at2/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42470Os.4671.2.S1_a_at11/114+24907660..24915263F-box protein FBL2, putative, expressed
LOC_Os04g42480Os.52652.1.S1_at11/114+24921115..24926056Nodulation receptor kinase precursor, putative, expressed
LOC_Os04g42490Os.49197.2.S1_x_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490Os.49197.1.S1_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490OsAffx.18976.1.S1_at1/114+24926782..24930497DIE2/ALG10 family, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52102.1.A1_at--239--6191Chr04:24899628..24899652 (25 bp)
GAGGACACGGATGCAGCAACAGCTT
LOC_Os04g42444
Os.52102.1.A1_at--462--6651Chr04:24899557..24899581 (25 bp)
GTTGATCTGTCACCTGGATTTCCTC
LOC_Os04g42444
Os.52102.1.A1_at--374--9252Chr11:460452..460484 (24 bp)
TCCTCCCTTGGTTCTCAAAGAAGAA
NONE
Os.52102.1.A1_at--869--6611Chr04:24899411..24899435 (25 bp)
GTTGGTCCTTGTCTTCATTTTTATG
LOC_Os04g42444
Os.52102.1.A1_at--1140--1791Chr04:24899377..24899401 (25 bp)
ACCCCTCTTGATGCATGTATTACTA
LOC_Os04g42444
Os.52102.1.A1_at--1073--3691Chr04:24899339..24899363 (25 bp)
CTAGCTTAGTAGTAGGTGCCTCCTC
LOC_Os04g42444
Os.52102.1.A1_at--630--1032Chr09:15867161..15867231 (25 bp)
AGGTGCCTCCTCTTGAGTTGGTAGT
NONE
Os.52102.1.A1_at--722--4512Chr02:34199466..34199486 (21 bp)
GTTGGTAGTTTTCTCCGGCAATAAT
NONE
Os.52102.1.A1_at--1151--5451Chr04:24899233..24899257 (25 bp)
GAACATTTACAGTGGTCATTCCTGA
LOC_Os04g42444
Os.52102.1.A1_at--1013--3111Chr04:24899209..24899233 (25 bp)
AATTTGTGCTCTGAAGTAGCCCCAC
LOC_Os04g42444
Os.52102.1.A1_at--71--5271Chr04:24899151..24899175 (25 bp)
GAATCCGAGTTATTGCAGTTCTCAT
LOC_Os04g42444
Target Sequence 
GAGGACACGGATGCAGCAACAGCTTCAAGTGTTCTTTTTTTCACTGGTTTCTTGATTTGTTCTTTCTCCCCGTTGATCTG
TCACCTGGATTTCCTCCTCCCTTGGTTCTCAAAGAAGAAGAATTAAATTAAAATTAGTGGAGACTATTAGAGATGGATGG
ATCGATCTTTAATTTTTCTCTGTGCAGTGTGCACAGCACAGGGAAGGAGGGGTCACTGTTGGTCCTTGTCTTCATTTTTA
TGTCCTTAATTACCCCTCTTGATGCATGTATTACTACNAGTTACTAGTACTAGCTTAGTAGTAGGTGCCTCCTCTTGAGT
TGGTAGTTTTCTCCGGCAATAATAAGGATGAATATATATATATGCCATCATAATCTGTTGTCCTGTGAGGAGAAGGAACA
TTTACAGTGGTCATTCCTGAATTTGTGCTCTGAAGTAGCCCCACAGGATTTTGATATGTAGATAAATGTGATCAGATGAA
TCCGAGTTATTGCAGTTCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52102.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis