Browse Element(s) Details


Os.5213.1.S1_at

Description gb:AK058228.1
DB_XREF= gi:32968246
TID=Os.5213.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5213 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013166I11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-H12, full insert sequence.
FL= gb:AK099066.1 gb:AK058228.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4472011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44670Os.55089.1.S1_at11/112+27067387..27068221Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44680Os.54838.1.S1_at11/112+27071411..27073134permease, cytosine/purines, uracil, thiamine, allantoin family protein, expressed
LOC_Os02g44690Os.49176.1.S1_at11/112+27073429..27076784HSPC171 protein, putative, expressed
LOC_Os02g44700NANA2+27077078..27077542Zinc finger, C3HC4 type family protein
LOC_Os02g44710OsAffx.24726.1.S1_s_at11/112+27085984..27086938expressed protein
LOC_Os02g44710Os.14092.1.S1_at10/112+27085984..27086938expressed protein
LOC_Os02g44720Os.5213.1.S1_at11/112+27091925..27092693expressed protein
LOC_Os02g44730Os.50950.1.S1_x_at11/112+27097597..27100028tetracycline transporter protein, putative, expressed
LOC_Os02g44740Os.5310.1.A2_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.1.A1_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.3.A1_at10/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44750OsAffx.12496.1.S1_at11/112+27106140..27108049hypothetical protein
LOC_Os02g44750OsAffx.661.1.S1_x_at1/112+27106140..27108049hypothetical protein
LOC_Os02g44760OsAffx.12497.1.S1_at11/112+27109727..27110312hypothetical protein
LOC_Os02g44770Os.49105.1.S1_at11/112+27112137..27116566mechanosensitive ion channel domain-containing protein, putative, expressed
LOC_Os02g44770Os.49105.2.S1_at10/112+27112137..27116566mechanosensitive ion channel domain-containing protein, putative, expressed
LOC_Os02g44780Os.18321.1.S1_at11/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44780Os.18321.2.S1_at10/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44780Os.18321.3.S1_at9/112+27114816..27118593Polyprenyl synthetase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5213.1.S1_at--659--8531Chr02:27092501..27092525 (25 bp)
TGGACGCCAAGACGGTCACTGCCAT
LOC_Os02g44720
Os.5213.1.S1_at--902--3511Chr02:27092206..27092230 (25 bp)
CATCCCGGAGGAGTGCTTTAGCTAG
LOC_Os02g44720
Os.5213.1.S1_at--486--10051Chr02:27092184..27092208 (25 bp)
TAGGTACCCACGTCTACGAATGTGT
LOC_Os02g44720
Os.5213.1.S1_at--507--1151Chr02:27092159..27092183 (25 bp)
AGTCGATTCGCAACATGTATAGCTT
LOC_Os02g44720
Os.5213.1.S1_at--512--8771Chr02:27092144..27092168 (25 bp)
TGTATAGCTTCGGTGATCAGTCCCT
LOC_Os02g44720
Os.5213.1.S1_at--863--10631Chr02:27092094..27092118 (25 bp)
TTCCTACTAGGCTGCAACCGATCGA
LOC_Os02g44720
Os.5213.1.S1_at--1073--2611Chr02:27092079..27092103 (25 bp)
AACCGATCGATCTAGTTGGGCCAAA
LOC_Os02g44720
Os.5213.1.S1_at--46--1131Chr02:27092051..27092075 (25 bp)
AGTGCCCAATGGTTGCATCCCAACT
LOC_Os02g44720
Os.5213.1.S1_at--940--10331Chr02:27092010..27092034 (25 bp)
TTTAATCTGGCATTTGGACCCAAAT
LOC_Os02g44720
Os.5213.1.S1_at--379--6811Chr02:27091977..27092001 (25 bp)
GTTTTCCTGGTTCGATGCATGTACA
LOC_Os02g44720
Os.5213.1.S1_at--801--4991Chr02:27091961..27091985 (25 bp)
GCATGTACATATCTCTGCACACGAA
LOC_Os02g44720
Target Sequence 
TGGACGCCAAGACGGTCACTGCCATCGAGCAGTCCACGGGCGCGGCCATCGCCGACGCCGCTGCGGCTGGCGCCGAGGGC
GCCGGCGGCGGGATGCGCGTCAAGATCGTGCTGAGCAAGCAGCAGCTGAAGCAGGTGGCCGCGGCCGTCGCCGGAGGGGG
CGCCTTCGCGCTGCCGCCGGCGCTGGAGCAGCTCGTGAGCGTGCTCAAGCGGCAGCACGCGAAGAAGCAGGTGGCAGCGG
CTGCTGATGTGGTCGTCGGAAGGCGCCGCTGCCGGTGGTCGCCGGCGTTGCAGAGCATCCCGGAGGAGTGCTTTAGCTAG
GTACCCACGTCTACGAATGTGTAGTCGATTCGCAACATGTATAGCTTCGGTGATCAGTCCCTCCTTTTTTTGGCGATATT
CCCTTCCTTCCTACTAGGCTGCAACCGATCGATCTAGTTGGGCCAAAGTTAGTGCCCAATGGTTGCATCCCAACTTTGAA
ATGTCATGTATTTTAATCTGGCATTTGGACCCAAATTTTCCTCCGTTTTCCTGGTTCGATGCATGTACATATCTCTGCAC
ACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis