Browse Element(s) Details


Os.52131.1.S1_at

Description gb:AK065012.1
DB_XREF= gi:32975030
TID=Os.52131.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52131 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001F04, full insert sequence.
FL= gb:AK065012.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2160011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21560OsAffx.22947.1.S1_x_at11/114+12160207..12164784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21560OsAffx.22947.2.S1_x_at6/114+12160207..12164784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21560OsAffx.22947.3.S1_x_at6/114+12160207..12164784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21560OsAffx.22947.5.S1_x_at3/114+12160207..12164784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21570OsAffx.26086.1.S1_at11/114+12172341..12173177Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
LOC_Os04g21580Os.5266.1.S1_at11/114+12180687..12181785retrotransposon protein, putative, unclassified, expressed
LOC_Os04g21590Os.29775.1.S1_at10/114+12187160..12188617PB1 domain containing protein, expressed
LOC_Os04g21590OsAffx.13908.1.S1_x_at1/114+12187160..12188617PB1 domain containing protein, expressed
LOC_Os04g21600Os.52131.1.S1_at11/114+12188922..12193009expressed protein
LOC_Os04g21610Os.19506.1.S1_at4/114+12196416..12204390hypothetical protein
LOC_Os04g21610OsAffx.24469.1.S1_x_at1/114+12196416..12204390hypothetical protein
LOC_Os04g21610OsAffx.9807.1.A1_at1/114+12196416..12204390hypothetical protein
LOC_Os04g21620NANA4+12208506..12208871hypothetical protein
LOC_Os04g21640OsAffx.3848.1.S1_at10/114+12213538..12216719hypothetical protein
LOC_Os04g21640Os.16349.1.S1_at2/114+12213538..12216719hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52131.1.S1_at--914--892Chr12:4080499..4080519 (21 bp)
AGGCGAGGCCCGATGGATCCATGCT
NONE
Os.52131.1.S1_at--14--1831Chr04:12192254..12192278 (25 bp)
ACGCCAGCTTGGACGAGTACATCTC
LOC_Os04g21600
Os.52131.1.S1_at--991--4331Chr04:12192199..12192223 (25 bp)
CCAGTGGGCTCTCAACGAGTACTAT
LOC_Os04g21600
Os.52131.1.S1_at--1038--6551Chr04:12189265..12189289 (25 bp)
GATTCTCGCCAATTCAGTTCGATTT
LOC_Os04g21600
Os.52131.1.S1_at--583--10431Chr04:12189241..12189265 (25 bp)
TTATGTCGTATCTGTCTACCATGCA
LOC_Os04g21600
Os.52131.1.S1_at--901--71Chr04:12189213..12189237 (25 bp)
ATTCCTTTGTTTGCTTCATTTGTGT
LOC_Os04g21600
Os.52131.1.S1_at--243--5351Chr04:12189154..12189178 (25 bp)
GAAGTTGATACCTCTTCTGCTGCAA
LOC_Os04g21600
Os.52131.1.S1_at--299--9991Chr04:12189128..12189152 (25 bp)
TAGCAGGCCCGGACACAATCTGTAA
LOC_Os04g21600
Os.52131.1.S1_at--673--451Chr04:12189111..12189135 (25 bp)
ATCTGTAATCTGTTCGTGCCAAAGC
LOC_Os04g21600
Os.52131.1.S1_at--749--2431Chr04:12189063..12189087 (25 bp)
AAAAGCATTTTGTTGGCTCCTCGCA
LOC_Os04g21600
Os.52131.1.S1_at--1002--7431Chr04:12189033..12189057 (25 bp)
GTGTAGCCCTACGTATTCTTTACAA
LOC_Os04g21600
Target Sequence 
AGGCGAGGCCCGATGGATCCATGCTCGCCTTGTTCTGGGACACGGTCGCGCGCGTGCAAGAAGCGCACGCCAGCTTGGAC
GAGTACATCTCGAACTGGTTCGGGCTGGATCAATCCAAGTACCAGTGGGCTCTCAACGAGTACTATGAGAGCAACGGAAA
GGATATGGAGTCAGGGAAAGCTGCGAAGCCGAAGGAACTCGGTAGTAAAATGTAGGTCTAAAAAGCTGGATTACATCTGT
ATATGTCAATGGGGACATCTCTTCGATTCTCGCCAATTCAGTTCGATTTTATGTCGTATCTGTCTACCATGCAGCAATTC
CTTTGTTTGCTTCATTTGTGTAGCTAAGCTAGAGAACTGTGTGAAGTTTCACTGGGAAGTTGATACCTCTTCTGCTGCAA
CTAGCAGGCCCGGACACAATCTGTAATCTGTTCGTGCCAAAGCGTTGAAAAAAGTCCAGTGCGGCAAAAAGCATTTTGTT
GGCTCCTCGCACCAATGTGTAGCCCTACGTATTCTTTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis