Browse Element(s) Details


Os.52180.1.S1_at

Description gb:AK065483.1
DB_XREF= gi:32975501
TID=Os.52180.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52180 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013008G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013008G03, full insert sequence.
FL= gb:AK065483.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0403011/11HVA22-like protein i, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03949Os.15751.1.S1_at11/113+1782819..1791636expressed protein
LOC_Os03g03949Os.45957.4.S1_x_at1/113+1782819..1791636expressed protein
LOC_Os03g03970NANA3+1791816..1792184retrotransposon protein, putative, unclassified
LOC_Os03g03980OsAffx.24957.1.S1_at11/113+1793782..1794833expressed protein
LOC_Os03g03990Os.16968.1.S1_at10/113+1795856..1797181'chromo' domain containing protein, expressed
LOC_Os03g04000Os.18327.1.S1_at11/113+1800611..1804371AMP-binding enzyme family protein, expressed
LOC_Os03g04010OsAffx.24958.1.S1_at11/113+1805566..1805960hypothetical protein
LOC_Os03g04020Os.21349.1.S1_at11/113+1809675..1811413Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os03g04030Os.52180.1.S1_at11/113+1814950..1818869HVA22-like protein i, putative, expressed
LOC_Os03g04040NANA3+1823179..1824168hypothetical protein
LOC_Os03g04050Os.23253.1.S1_at11/113+1831985..1836891protein kinase family protein, putative, expressed
LOC_Os03g04060Os.1191.1.S1_at11/113+1839540..1840897Basic endochitinase precursor, putative, expressed
LOC_Os03g04070Os.21395.1.S1_at4/113+1841469..1843356No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52180.1.S1_at--138--8851Chr03:1815476..1815500 (25 bp)
TGATCCATCTGGTCCATCAACAAGC
LOC_Os03g04030
Os.52180.1.S1_at--948--3411Chr03:1815429..1815453 (25 bp)
CAGACGAAGATACGCTCATCCAGGA
LOC_Os03g04030
Os.52180.1.S1_at--973--2871Chr03:1815327..1815351 (25 bp)
AAGGGTGATCTCGACACACCATTCG
LOC_Os03g04030
Os.52180.1.S1_at--1103--1731Chr03:1815310..1815334 (25 bp)
ACCATTCGCTCTATGCTGGGATGAT
LOC_Os03g04030
Os.52180.1.S1_at--214--3891Chr03:1815295..1815319 (25 bp)
CTGGGATGATTCTGCACCTTCGGGC
LOC_Os03g04030
Os.52180.1.S1_at--129--1751Chr03:1815280..1815304 (25 bp)
ACCTTCGGGCGTTCAACTGATAACA
LOC_Os03g04030
Os.52180.1.S1_at--981--3031Chr03:1815213..1815237 (25 bp)
AATCCTCCTGGAGTGAACGCACACA
LOC_Os03g04030
Os.52180.1.S1_at--276--2191Chr03:1815193..1815217 (25 bp)
ACACATTCCTCCTCTTGATGTGATG
LOC_Os03g04030
Os.52180.1.S1_at--1049--771Chr03:1815176..1815200 (25 bp)
ATGTGATGCCTGTTGCTGTCGTCTC
LOC_Os03g04030
Os.52180.1.S1_at--743--6171Chr03:1815060..1815084 (25 bp)
GAGGAGTCAGGTCCGTCATATTTGA
LOC_Os03g04030
Os.52180.1.S1_at--820--1191Chr03:1815011..1815035 (25 bp)
AGTATGCGTGACTGACTTGCCGAAA
LOC_Os03g04030
Target Sequence 
TGATCCATCTGGTCCATCAACAAGCAACGCACGTCAGTCATCAATACCAGACGAAGATACGCTCATCCAGGAGGCTATTC
GGATGACGAGGGGCCGGCTTAGGAGGCGCACGGCCGGGTCTGGACCTCCACCAAGTTAGAACCTACACCAAGGGTGATCT
CGACACACCATTCGCTCTATGCTGGGATGATTCTGCACCTTCGGGCGTTCAACTGATAACAGAAGGAAATGCTGGGTTGG
TGAAAAGTGATTCAAATATTTCAAATCCTCCTGGAGTGAACGCACACATTCCTCCTCTTGATGTGATGCCTGTTGCTGTC
GTCTCACTACTCCCAAATGTGCATAATAGAGGCAATGATGACACATATCAGTAGCTTGGCATGTCGAATGCATCAAGATG
GGTCGAACTTGTCCATGAGGAGTCAGGTCCGTCATATTTGAATTTTGAAAAGTTCAACATACCAAAGTATGCGTGACTGA
CTTGCCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis