Browse Element(s) Details


Os.52198.1.S1_at

Description gb:AK068352.1
DB_XREF= gi:32978370
TID=Os.52198.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023020G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146A02, full insert sequence.
FL= gb:AK068576.1 gb:AK068352.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1144011/11F-box protein interaction domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11400Os.26587.1.A1_at11/114+6211642..6212423expressed protein
LOC_Os04g11410Os.45976.1.S1_at2/114+6213345..6216054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11410Os.45976.1.S1_x_at1/114+6213345..6216054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11420Os.46306.1.S1_x_at8/114+6218593..6221501transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11430OsAffx.25981.1.S1_at10/114+6230570..6233423NB-ARC domain containing protein
LOC_Os04g11440Os.52198.1.S1_at11/114+6235994..6238359F-box protein interaction domain containing protein, expressed
LOC_Os04g11440OsAffx.13771.1.S1_x_at11/114+6235994..6238359F-box protein interaction domain containing protein, expressed
LOC_Os04g11450Os.52446.1.S1_at9/114+6242596..6244070F-box domain containing protein, expressed
LOC_Os04g11470OsAffx.13772.1.S1_at11/114+6256254..6258461hypothetical protein
LOC_Os04g11470OsAffx.13772.1.S1_x_at11/114+6256254..6258461hypothetical protein
LOC_Os04g11480OsAffx.10632.1.S1_at2/114+6259780..6262582retrotransposon protein, putative, unclassified
LOC_Os04g11480OsAffx.26189.1.S1_at2/114+6259780..6262582retrotransposon protein, putative, unclassified
LOC_Os04g11480OsAffx.7616.1.S1_at1/114+6259780..6262582retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52198.1.S1_at--302--8731Chr04:6236189..6236213 (25 bp)
TGTCTATTAGGTATGTGCTATCACT
LOC_Os04g11440
Os.52198.1.S1_at--791--10151Chr04:6236171..6236195 (25 bp)
TATCACTTTGACTAGGTGAAGCCAG
LOC_Os04g11440
Os.52198.1.S1_at--534--5311Chr04:6236144..6236168 (25 bp)
GAAGGTTTATAGTCCTAGTTTACTG
LOC_Os04g11440
Os.52198.1.S1_at--629--10191Chr04:6236137..6236161 (25 bp)
TATAGTCCTAGTTTACTGTCTTTAG
LOC_Os04g11440
Os.52198.1.S1_at--54--9931Chr04:6236124..6236148 (25 bp)
TACTGTCTTTAGGATGTTCTGTTAA
LOC_Os04g11440
Os.52198.1.S1_at--847--7991Chr04:6236113..6236137 (25 bp)
GGATGTTCTGTTAAAACTTGTTGAG
LOC_Os04g11440
Os.52198.1.S1_at--542--2071Chr04:6236098..6236122 (25 bp)
ACTTGTTGAGTTATGTCTGTTAGAT
LOC_Os04g11440
Os.52198.1.S1_at--128--7711Chr04:6236068..6236092 (25 bp)
GGGTCTGACCAGAAAACCTGATATT
LOC_Os04g11440
Os.52198.1.S1_at--811--3411Chr04:6236059..6236083 (25 bp)
CAGAAAACCTGATATTATCCTGTAT
LOC_Os04g11440
Os.52198.1.S1_at--790--10131Chr04:6236044..6236068 (25 bp)
TATCCTGTATGTTGGAAATACCTGC
LOC_Os04g11440
Os.52198.1.S1_at--1040--2251Chr04:6236029..6236053 (25 bp)
AAATACCTGCAGTTCCTTGCTTTGC
LOC_Os04g11440
Target Sequence 
TGTCTATTAGGTATGTGCTATCACTTTGACTAGGTGAAGCCAGGGGAAGGTTTATAGTCCTAGTTTACTGTCTTTAGGAT
GTTCTGTTAAAACTTGTTGAGTTATGTCTGTTAGATGACTGGGGTCTGACCAGAAAACCTGATATTATCCTGTATGTTGG
AAATACCTGCAGTTCCTTGCTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis