Browse Element(s) Details


Os.52240.1.S1_at

Description gb:AK065824.1
DB_XREF= gi:32975842
TID=Os.52240.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52240 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013041A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041A20, full insert sequence.
FL= gb:AK065824.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3919011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39160Os.49419.1.S1_at4/1111+22804542..22812100NB-ARC domain containing protein
LOC_Os11g39170NANA11+22813491..22818491retrotransposon protein, putative, unclassified
LOC_Os11g39190Os.52240.1.S1_at11/1111+22832391..22836099NB-ARC domain containing protein, expressed
LOC_Os11g39200OsAffx.31381.1.S1_at11/1111+22840926..22843324hAT family dimerisation domain containing protein
LOC_Os11g39200Os.57369.1.S1_at2/1111+22840926..22843324hAT family dimerisation domain containing protein
LOC_Os11g39210OsAffx.6388.1.S1_at4/1111+22845476..22847913hypothetical protein
LOC_Os11g39210OsAffx.6388.1.S1_x_at3/1111+22845476..22847913hypothetical protein
LOC_Os11g39220Os.7513.1.S1_at11/1111+22852827..22856982Acyl-coenzyme A oxidase 2, peroxisomal precursor, putative, expressed
LOC_Os11g39220Os.50057.1.S1_at1/1111+22852827..22856982Acyl-coenzyme A oxidase 2, peroxisomal precursor, putative, expressed
LOC_Os11g39230OsAffx.7352.1.S1_at11/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.2.S1_x_at9/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.3.S1_x_at8/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.5.S1_x_at6/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.4.S1_x_at1/1111+22859810..22864593hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52240.1.S1_at--146--1531Chr11:22835458..22835482 (25 bp)
AGCATCACAACTCTATTGACCTTTT
LOC_Os11g39190
Os.52240.1.S1_at--1100--5811Chr11:22835474..22835498 (25 bp)
TGACCTTTTCATCAACGGTACCCAA
LOC_Os11g39190
Os.52240.1.S1_at--191--131Chr11:22835546..22835570 (25 bp)
ATTCAACCAAGTCAATCCGCCAGAG
LOC_Os11g39190
Os.52240.1.S1_at--480--672Chr11:22835644..22835668 (25 bp)
ATGAAGCAGAGTGCCATGCCTAGCT
LOC_Os11g39190
Os.52240.1.S1_at--556--4432Chr11:22835656..22835680 (25 bp)
GCCATGCCTAGCTCCTATTGAAAAG
LOC_Os11g39190
Os.52240.1.S1_at--681--951Chr11:22835777..22835801 (25 bp)
AGGAAATGATGTCCGCCTCTCCTGA
LOC_Os11g39190
Os.52240.1.S1_at--525--3771Chr11:22835793..22835817 (25 bp)
CTCTCCTGACAATACATCTCACAGA
LOC_Os11g39190
Os.52240.1.S1_at--245--3851Chr11:22835836..22835860 (25 bp)
CTGCATCACGTGGTCGCTTCTGTAT
LOC_Os11g39190
Os.52240.1.S1_at--607--4911Chr11:22835851..22835875 (25 bp)
GCTTCTGTATTGCTGTTGGTCGCCG
LOC_Os11g39190
Os.52240.1.S1_at--333--3991Chr11:22835874..22835898 (25 bp)
CGTGTACATATGTGGCCCGCAATTT
LOC_Os11g39190
Os.52240.1.S1_at--143--9131Chr11:22835898..22835922 (25 bp)
TGCGGGCTACCATCGTTATATTTTC
LOC_Os11g39190
Target Sequence 
AGCATCACAACTCTATTGACCTTTTCATCAACGGTACCCAAATAGAAGTTAATCAGGCTGGTGAGGAGAAGGCAGAGAGT
GCAACAAGATTCAACCAAGTCAATCCGCCAGAGGATGTTGTTCAGGCAGAAGATGAGGCGGCACTGAGGAGAGAAACAGA
GTTTCAGAGCGAGAAAGAAGATGAAGATGAAGCAGAGTGCCATGCCTAGCTCCTATTGAAAAGGAAATGATGTCCGCCTC
TCCTGACAATACATCTCACAGAACAGTGAGATAATAACTCCTGCATCACGTGGTCGCTTCTGTATTGCTGTTGGTCGCCG
TGTACATATGTGGCCCGCAATTTGCGGGCTACCATCGTTATATTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis