Browse Element(s) Details


Os.52250.1.A1_at

Description gb:AK065889.1
DB_XREF= gi:32975907
TID=Os.52250.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52250 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044H07, full insert sequence.
FL= gb:AK065889.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6807011/11salt-inducible protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68040Os.26355.1.S1_at11/111+39878283..39882103CorA-like Mg2+ transporter protein, expressed
LOC_Os01g68050Os.8422.1.S1_at11/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68050Os.47836.1.A1_at4/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68060Os.11396.1.S1_at11/111+39892600..39896895Copine family protein, expressed
LOC_Os01g68070Os.52250.1.A1_at11/111+39903897..39907035salt-inducible protein, putative, expressed
LOC_Os01g68080OsAffx.23965.1.S1_at11/111+39907344..39908254Harpin-induced protein 1 containing protein
LOC_Os01g68090OsAffx.11785.1.S1_at11/111+39909204..39910571Harpin-induced protein 1 containing protein
LOC_Os01g68104OsAffx.2432.1.S1_at11/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104Os.19434.1.S1_at9/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.3.S1_at7/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.2.S1_x_at2/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.1.S1_at1/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68120Os.49417.1.S1_at11/111+39919469..39932566RNase3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52250.1.A1_at--663--7551Chr01:39906366..39906390 (25 bp)
GTGGCCACTGCCAAACGAGTTGCAA
LOC_Os01g68070
Os.52250.1.A1_at--28--1251Chr01:39906383..39906406 (24 bp)
AGTTGCAACTGCACTAGGCCGAGGA
LOC_Os01g68070
Os.52250.1.A1_at--117--6071Chr01:39906501..39906525 (25 bp)
GAGTTGCTGCTCAGGATTTCCAGTA
LOC_Os01g68070
Os.52250.1.A1_at--850--2791Chr01:39906525..39906549 (25 bp)
AAGATGTTTCCTTGCGAACACGCTG
LOC_Os01g68070
Os.52250.1.A1_at--246--7011Chr01:39906616..39906640 (25 bp)
GTACTGAACTCTGCAAGAGCCTCAG
LOC_Os01g68070
Os.52250.1.A1_at--428--6251Chr01:39906667..39906691 (25 bp)
GATGGTATCTTGTGCCTGTGAATGT
LOC_Os01g68070
Os.52250.1.A1_at--537--8191Chr01:39906715..39906739 (25 bp)
GGAAGTTTTGACATCGGCTTCACCC
LOC_Os01g68070
Os.52250.1.A1_at--479--2371Chr01:39906742..39906766 (25 bp)
AAACCCGTTGTCACATCAGGTACCA
LOC_Os01g68070
Os.52250.1.A1_at--599--451Chr01:39906860..39906884 (25 bp)
ATCTACTTGTGACGTTGGCTGGCAT
LOC_Os01g68070
Os.52250.1.A1_at--783--4711Chr01:39906877..39906901 (25 bp)
GCTGGCATGCATGGCTATTTGGTCA
LOC_Os01g68070
Os.52250.1.A1_at--424--7011Chr01:39906914..39906938 (25 bp)
GTACTTTCGGTGGTTGAGCATTTCA
LOC_Os01g68070
Target Sequence 
GTGGCCACTGCCAAACGAGTTGCAACTGCACTAGGCCGAGGAGGCTGCCGTTGAGTTGCTGCTCAGGATTTCCAGTAAGA
TGTTTCCTTGCGAACACGCTGGCGGTGGTGGCAATGTGGATTCAGTCATCAATGATGGGAAATTGGGAACGACATCAGAG
GCAACAAGTACTGAACTCTGCAAGAGCCTCAGAATTTTCTGAAGGGAAAGGATGTGAGGATGGTATCTTGTGCCTGTGAA
TGTGACAAGCAATGAAGCAAATNCCCTGGAAGTTTTGACATCGGCTTCACCCAAAAACCCGTTGTCACATCAGGTACCAA
AAAGTTTTGGNAAATATATTACAAGATGATCTTGTCAATCTTTCATATGTTGGATAGAAATGCTTTAATTTTGGTCGCNT
CAGAGATCATGCATCTACTTGTGACGTTGGCTGGCATGCATGGCTATTTGGTCATANTGGTTATGTGTACTTTCGGTGGT
TGAGCATTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52250.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis