Browse Element(s) Details


Os.52300.1.S1_at

Description gb:AK066224.1
DB_XREF= gi:32976242
TID=Os.52300.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013056G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056G10, full insert sequence.
FL= gb:AK066224.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2851011/11expressed protein
LOC_Os01g622441/11Ubiquitin-conjugating enzyme E2 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28460Os.28943.1.S1_x_at2/1110+14478938..14482178retrotransposon protein, putative, unclassified
LOC_Os10g28470NANA10+14482798..14488760retrotransposon protein, putative, unclassified
LOC_Os10g28480NANA10+14491475..14492195hypothetical protein
LOC_Os10g28490OsAffx.6798.2.A1_at11/1110+14493236..14493959expressed protein
LOC_Os10g28510Os.52300.1.S1_at11/1110+14502067..14509951expressed protein
LOC_Os10g28510OsAffx.30573.1.S1_at11/1110+14502067..14509951expressed protein
LOC_Os10g28510OsAffx.1264.1.S1_x_at1/1110+14502067..14509951expressed protein
LOC_Os10g28520OsAffx.30574.1.S1_at11/1110+14510568..14512810CAF1 family ribonuclease containing protein
LOC_Os10g28520OsAffx.30576.2.S1_x_at1/1110+14510568..14512810CAF1 family ribonuclease containing protein
LOC_Os10g28530OsAffx.18427.1.S1_at11/1110+14519149..14519460hypothetical protein
LOC_Os10g28540OsAffx.30576.2.S1_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.2.S1_x_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.1.S1_at7/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28550NANA10+14530455..14533213hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009650biological_processUV protection
GO:0005622cellular_componentintracellular
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52300.1.S1_at--713--9831Chr10:14502630..14502654 (25 bp)
TAAACCCCAATGATGATCATGTTTA
LOC_Os10g28510
Os.52300.1.S1_at--124--4094Chr10:17073608..17073632 (25 bp)
CGAGCCGTATTGGAGTACAGTGACA
NONE
Os.52300.1.S1_at--785--2198Chr10:17073630..17073649 (20 bp)
ACAAAGTCGCTGACGTTTTGACGGA
NONE
Os.52300.1.S1_at--142--4716Chr10:5316233..5316351 (24 bp)
GCTGACGTTTTGACGGAACTTCTAG
NONE
Os.52300.1.S1_at--240--351Chr10:14502450..14502474 (25 bp)
ATAAAGATAACAGGCAGTGGACGGG
LOC_Os10g28510
Os.52300.1.S1_at--485--2893Chr03:29347779..29347798 (20 bp)
AATGGTAGCGTTTGACGGGAATTCT
NONE
Os.52300.1.S1_at--623--4632Chr10:14502404..14502428 (25 bp)
GCGTTTGACGGGAATTCTATAAATT
LOC_Os10g28510
Os.52300.1.S1_at--522--8152Chr10:14502209..14502233 (25 bp)
GGAATGATAGGGTTTGGTCTTTCAA
LOC_Os10g28510
Os.52300.1.S1_at--382--7813Chr01:23192177..23192201 (25 bp)
GGTCTTTCAAACCTTATCATATAAA
NONE
Os.52300.1.S1_at--406--3133Chr06:9424440..9424464 (25 bp)
AATTTTGTATAGGTGTTAGCCGCGC
NONE
Os.52300.1.S1_at--303--6877Chr11:28311816..28311835 (20 bp)
GTATAGGTGTTAGCCGCGCAATTGC
NONE
Target Sequence 
TAAACCCCAATGATGATCATGTTTAATTTTAAAATCTCGATGAGAATAAAGAAGGAAGGCAGCGGGCGAGCCGTATTGGA
GTACAGTGACAAAGTCGCTGACGTTTTGACGGAACTTCTAGAAACTAAAAAAATTAAACCTAAACGACAATTATGTTTGT
TTTTTAAAATACCAATGACAATAAAGATAACAGGCAGTGGACGGGCCGTAGAGGAGTATAATGGTAGCGTTTGACGGGAA
TTCTATAAATTATAAAAACAAAACCCAACGAGACGATAAACTCTAAAAACTATAAGATCCAATTTTAAAAGGTTCCAAAG
AGAATGAATAGAAACAGTGATAGATCAAGCAAGCAAATAAAGAAGGATATGACAGAAGTAACGGGTAGCAACTGGTGTAA
AATTAAAAAATTAGAAACACGGGAATGATAGGGTTTGGTCTTTCAAACCTTATCATATAAAATATATAATTTTGTATAGG
TGTTAGCCGCGCAATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis