Browse Element(s) Details


Os.52314.1.S2_x_at

Description gb:CB667511
DB_XREF= gi:29671236
DB_XREF=OSJNEd14O01.f
CLONE=OSJNEd14O01
TID=Os.52314.1
CNT=3
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.52314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013061K16, full insert sequence
FL= gb:AK066330.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5294011/11SIT4 phosphatase-associated family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52900Os.5631.1.S1_s_at11/114+31283884..31295251ABC transporter, putative, expressed
LOC_Os04g52900OsAffx.4161.1.S1_at11/114+31283884..31295251ABC transporter, putative, expressed
LOC_Os04g52910OsAffx.14385.1.S1_at11/114+31300186..31300842hypothetical protein
LOC_Os04g52920Os.51021.1.S1_at11/114+31305695..31308804Remorin, C-terminal region family protein, expressed
LOC_Os04g52930OsAffx.26582.1.S1_at11/114+31309078..31310437hypothetical protein
LOC_Os04g52940Os.52314.1.S2_x_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.8784.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S2_at9/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.38157.1.S1_s_at1/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52950Os.50496.1.S1_at11/114+31322937..31323695Nitrate-induced NOI protein, expressed
LOC_Os04g52960Os.23208.1.S1_at11/114+31325067..31332146RNA recognition motif family protein, expressed
LOC_Os04g52960Os.27035.2.S1_s_at1/114+31325067..31332146RNA recognition motif family protein, expressed
LOC_Os04g52970Os.22807.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970Os.18578.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970OsAffx.14387.1.S1_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52980OsAffx.26583.1.S1_at11/114+31340744..31341013expressed protein
LOC_Os04g52990Os.51611.1.S1_at11/114+31343331..31343904expressed protein
LOC_Os04g53000OsAffx.14387.3.S1_at11/114+31346084..31347211Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52314.1.S2_x_at--717--1431Chr04:31322059..31322083 (25 bp)
AGAACCTGCTGACGTACCTGAGAAC
LOC_Os04g52940
Os.52314.1.S2_x_at--749--1851Chr04:31322082..31322106 (25 bp)
ACGACACAGCAGTTCCAAATGGCGA
LOC_Os04g52940
Os.52314.1.S2_x_at--483--7991Chr04:31322140..31322164 (25 bp)
GGATGTTATGTCTGGCACAACTGAA
LOC_Os04g52940
Os.52314.1.S2_x_at--760--10371Chr04:31322190..31322214 (25 bp)
TTTTGTCTGGAACCTCGGTACCTGA
LOC_Os04g52940
Os.52314.1.S2_x_at--190--8171Chr04:31322198..31322222 (25 bp)
GGAACCTCGGTACCTGAGAGCACAA
LOC_Os04g52940
Os.52314.1.S2_x_at--286--8151Chr04:31322248..31322272 (25 bp)
GGAAATTAGTACAACCAGGCACCCT
LOC_Os04g52940
Os.52314.1.S2_x_at--376--3491Chr04:31322263..31322287 (25 bp)
CAGGCACCCTGAACCAGTTGATGAT
LOC_Os04g52940
Os.52314.1.S2_x_at--379--9111Chr04:31322455..31322479 (25 bp)
TGCTGATGTATTGATCTTCTGCCCC
LOC_Os04g52940
Os.52314.1.S2_x_at--177--651Chr04:31322483..31322507 (25 bp)
ATGCATCATACAACTGCTGACCATG
LOC_Os04g52940
Os.52314.1.S2_x_at--384--4951Chr04:31322510..31322534 (25 bp)
GCATTCTCTCATGGAGCTGCTTAAG
LOC_Os04g52940
Os.52314.1.S2_x_at--916--4891Chr04:31322528..31322552 (25 bp)
GCTTAAGTTTTCATATCTTCGCCAA
LOC_Os04g52940
Target Sequence 
AGAACCTGCTGACGTACCTGAGAACGACACAGCAGTTCCAAATGGCGAGGTTGGTAGTGTGGATCAGATGGATGGAATTG
AGGATGTTATGTCTGGCACAACTGAATTAAGAGTTGAAAAGGAGATTGAAGTTTTGTCTGGAACCTCGGTACCTGAGAGC
ACAATAGGAGAACTATTACCAGGTTCAACGGAAATTAGTACAACCAGGCACCCTGAACCAGTTGATGATAGGAATCCTAT
GGAGCCCCCTATGGGTGAACAAAAAGCAGAAAGCTGATGAAAAATCAGGCGAAATAGAAACAGACTCGTGGGAAAAGGTG
GATGTCATAATGATGATTATGGATGTGCAGGATGCATGGGGAACAAGTCAAACCATTCATTCATGTATAATAGAACTGCT
GATGTATTGATCTTCTGCCCCTGCATGCATCATACAACTGCTGACCATGCAGCATTCTCTCATGGAGCTGCTTAAGTTTT
CATATCTTCGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52314.1.S2_x_at     

Putative homologies in rice

Putative homologies in arabidopsis