Browse Element(s) Details


Os.52371.1.S1_at

Description gb:AK072836.1
DB_XREF= gi:32982859
TID=Os.52371.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023139G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139G06, full insert sequence.
FL= gb:AK072836.1 gb:AK066701.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2983011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29790OsAffx.7834.1.S1_at10/111+17016884..17020481hypothetical protein
LOC_Os01g29800Os.27490.2.S1_at3/111+17025093..17025710hypothetical protein
LOC_Os01g29800OsAffx.11234.1.S1_x_at1/111+17025093..17025710hypothetical protein
LOC_Os01g29820Os.27455.1.S1_at11/111+17034358..17039085expressed protein
LOC_Os01g29820Os.27455.1.S1_x_at11/111+17034358..17039085expressed protein
LOC_Os01g29820OsAffx.11259.1.S1_at8/111+17034358..17039085expressed protein
LOC_Os01g29820Os.809.1.A1_at6/111+17034358..17039085expressed protein
LOC_Os01g29830Os.52371.1.S1_at11/111+17043536..17046240expressed protein
LOC_Os01g29840Os.18337.1.S1_x_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.1.S1_s_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.2.S1_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.1.S1_at9/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.2.S1_x_at9/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29850NANA1+17053910..17055723hypothetical protein
LOC_Os01g29860OsAffx.11260.1.S1_at10/111+17055989..17057775hypothetical protein
LOC_Os01g29860Os.51201.1.S1_x_at6/111+17055989..17057775hypothetical protein
LOC_Os01g29870OsAffx.23454.1.S1_at10/111+17058510..17060585Multidrug resistance protein 1, putative, expressed
LOC_Os01g29880NANA1+17065927..17067780Zinc knuckle family protein
LOC_Os01g29890OsAffx.23456.1.S1_at11/111+17070047..17070319hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52371.1.S1_at--1092--7991Chr01:17044996..17045020 (25 bp)
GGAGGTCAAGCTCTTGGAGTCCAAT
LOC_Os01g29830
Os.52371.1.S1_at--903--9831Chr01:17045048..17045072 (25 bp)
TAAAGAGGGACACCGTGCTTCCTTG
LOC_Os01g29830
Os.52371.1.S1_at--734--9051Chr01:17045063..17045087 (25 bp)
TGCTTCCTTGTCCATTTCGTATTAA
LOC_Os01g29830
Os.52371.1.S1_at--1086--8331Chr01:17045094..17045118 (25 bp)
GGCTGATGCGTAAATGCTGTCTATT
LOC_Os01g29830
Os.52371.1.S1_at--150--2231Chr01:17045225..17045249 (25 bp)
ACAAGAGGCCAGGTATCTCCCAATG
LOC_Os01g29830
Os.52371.1.S1_at--965--6131Chr01:17045957..17045981 (25 bp)
GAGGTGGACCTTGTCTTATGTTGAC
LOC_Os01g29830
Os.52371.1.S1_at--144--7611Chr01:17046012..17046036 (25 bp)
GGGCAAGACAAGGTCATCCTTTTGT
LOC_Os01g29830
Os.52371.1.S1_at--571--6851Chr01:17046043..17046067 (25 bp)
GTTTGCTACAGAGGCGAACTTGTTG
LOC_Os01g29830
Os.52371.1.S1_at--1079--7031Chr01:17046136..17046160 (25 bp)
GTAAATCTTTTGGACACCTGTTGTA
LOC_Os01g29830
Os.52371.1.S1_at--948--8131Chr01:17046147..17046171 (25 bp)
GGACACCTGTTGTATCTATGCCACA
LOC_Os01g29830
Os.52371.1.S1_at--1081--6891Chr01:17046158..17046182 (25 bp)
GTATCTATGCCACATGCGTACTGCA
LOC_Os01g29830
Target Sequence 
GGAGGTCAAGCTCTTGGAGTCCAATACTATGAGGTGGTTGTGAATGTGGTGTTAAAGAGGGACACCGTGCTTCCTTGTCC
ATTTCGTATTAAAACTATGGCTGATGCGTAAATGCTGTCTATTGCATGGCCAAATAACAAAATCAGGGCAAACAAGAGGC
CAGGTATCTCCCAATGCGGAGGTGGAGGTTCTGGAAGGACATAGAGGTGGACCTTGTCTTATGTTGACAACAAGCTATGG
AGGATGACCTTGTTTTGGGGGCAAGACAAGGTCATCCTTTTGTAATGGAGTTTGCTACAGAGGCGAACTTGTTGGGAAAT
GCCAACATACTGCATGTAATGGAGTTTGCTTCAGGATAGATATGGTGGAACTTGGATGAAATGTAAATCTTTTGGACACC
TGTTGTATCTATGCCACATGCGTACTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis