Browse Element(s) Details


Os.52438.1.S1_at

Description gb:AK067138.1
DB_XREF= gi:32977156
TID=Os.52438.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52438 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013096L15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096L15, full insert sequence.
FL= gb:AK067138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3601011/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35930NANA5+21217261..21218032expressed protein
LOC_Os05g35940OsAffx.27194.1.S1_at11/115+21221263..21221565hypothetical protein
LOC_Os05g35950OsAffx.14978.1.S1_at11/115+21222914..21224000hypothetical protein
LOC_Os05g35950OsAffx.27186.1.S1_at1/115+21222914..21224000hypothetical protein
LOC_Os05g35960OsAffx.14979.1.S1_at11/115+21228377..21229313hypothetical protein
LOC_Os05g35970Os.49636.1.S1_at11/115+21230060..21230874expressed protein
LOC_Os05g35980Os.11957.1.S1_at11/115+21232644..21237274expressed protein
LOC_Os05g35980Os.54692.1.S1_at11/115+21232644..21237274expressed protein
LOC_Os05g36000Os.52875.1.S1_at11/115+21239636..21241948expressed protein
LOC_Os05g36010Os.52438.1.S1_at11/115+21242563..21245109Subtilisin N-terminal Region family protein, expressed
LOC_Os05g36020NANA5+21249700..21250023hypothetical protein
LOC_Os05g36030NANA5+21251738..21252438retrotransposon, putative, centromere-specific
LOC_Os05g36040NANA5+21253856..21257279retrotransposon, putative, centromere-specific
LOC_Os05g36050Os.16240.1.A1_s_at11/115+21259032..21262184Protein kinase domain containing protein, expressed
LOC_Os05g36050OsAffx.14981.1.S1_at10/115+21259032..21262184Protein kinase domain containing protein, expressed
LOC_Os05g36050Os.7112.1.S1_at1/115+21259032..21262184Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005576cellular_componentextracellular region
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52438.1.S1_at--1144--1311Chr05:21242927..21242951 (25 bp)
AGAGGCTGGTCTTCGGCCGCAAGCA
LOC_Os05g36010
Os.52438.1.S1_at--945--8411Chr05:21242913..21242937 (25 bp)
GGCCGCAAGCACGAGACGCAGAAGT
LOC_Os05g36010
Os.52438.1.S1_at--366--8851Chr05:21242879..21242903 (25 bp)
TGATCCGCGGGCAGATGAAGAACAA
LOC_Os05g36010
Os.52438.1.S1_at--1057--1871Chr05:21242849..21242873 (25 bp)
ACGAGGTGCTCCATGGGTCGCTGAC
LOC_Os05g36010
Os.52438.1.S1_at--897--4611Chr05:21242769..21242793 (25 bp)
GCGAGCTCGGCTCCGCTATAGGACA
LOC_Os05g36010
Os.52438.1.S1_at--955--4871Chr05:21242755..21242779 (25 bp)
GCTATAGGACACCTGCACAGTGACT
LOC_Os05g36010
Os.52438.1.S1_at--96--5131Chr05:21242741..21242765 (25 bp)
GCACAGTGACTAGATTACGCTCTCA
LOC_Os05g36010
Os.52438.1.S1_at--412--1251Chr05:21242730..21242754 (25 bp)
AGATTACGCTCTCATTCTCATAAGT
LOC_Os05g36010
Os.52438.1.S1_at--146--3591Chr05:21242718..21242742 (25 bp)
CATTCTCATAAGTCATTTCCGTTCG
LOC_Os05g36010
Os.52438.1.S1_at--1086--2531Chr05:21242662..21242686 (25 bp)
AACTAATACTTGTGTGTCAGCAGCA
LOC_Os05g36010
Os.52438.1.S1_at--494--7451Chr05:21242649..21242673 (25 bp)
GTGTCAGCAGCAGAGCATACGATAA
LOC_Os05g36010
Target Sequence 
AGAGGCTGGTCTTCGGCCGCAAGCACGAGACGCAGAAGTACACGGTGGTGATCCGCGGGCAGATGAAGAACAAGACCGAC
GAGGTGCTCCATGGGTCGCTGACGTGGGTCGACGACGCCGGCAAGTACACGGTGAGGAGCCCGATTGTGGCGACGACGGC
GAGCTCGGCTCCGCTATAGGACACCTGCACAGTGACTAGATTACGCTCTCATTCTCATAAGTCATTTCCGTTCGACTTAA
AAGGAAAACAANAACAAATAAAAGCAACTAATACTTGTGTGTCAGCAGCAGAGCATACGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis