Browse Element(s) Details

Os.52494.1.S1_at

Description

gb:AK067517.1
DB_XREF= gi:32977535
TID=Os.52494.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111E23, full insert sequence.
FL= gb:AK067517.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g47660	1/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g47600	Os.6291.1.S1_x_at	11/11	6	+	28824832..28826005	Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os06g47600	Os.6291.1.S1_at	11/11	6	+	28824832..28826005	Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os06g47610	NA	NA	6	+	28829642..28830505	transposon protein, putative, unclassified
LOC_Os06g47620	Os.54966.1.S1_at	11/11	6	+	28830650..28836130	IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os06g47620	OsAffx.19893.1.S1_at	1/11	6	+	28830650..28836130	IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os06g47630	NA	NA	6	+	28845114..28845938	hypothetical protein
LOC_Os06g47640	Os.53014.1.S1_at	11/11	6	+	28846315..28847024	EF hand family protein, expressed
LOC_Os06g47660	Os.11189.2.S1_at	11/11	6	+	28850713..28856262	expressed protein
LOC_Os06g47660	OsAffx.28159.1.S1_at	10/11	6	+	28850713..28856262	expressed protein
LOC_Os06g47660	Os.52494.1.S1_at	1/11	6	+	28850713..28856262	expressed protein
LOC_Os06g47650	Os.11189.1.S1_at	11/11	6	+	28852113..28855938	Leucine Rich Repeat family protein, expressed
LOC_Os06g47670	OsAffx.28160.1.S1_x_at	4/11	6	+	28856674..28857261	hypothetical protein
LOC_Os06g47670	OsAffx.28160.1.S1_at	3/11	6	+	28856674..28857261	hypothetical protein
LOC_Os06g47680	OsAffx.10373.1.S1_x_at	11/11	6	+	28858090..28859394	F-box domain containing protein
LOC_Os06g47680	OsAffx.10373.1.S1_at	11/11	6	+	28858090..28859394	F-box domain containing protein
LOC_Os06g47690	OsAffx.15974.1.S1_at	9/11	6	+	28862877..28864000	hypothetical protein
LOC_Os06g47700	Os.11785.1.S1_at	11/11	6	+	28866479..28869892	Leucine Rich Repeat family protein, expressed
LOC_Os06g47700	Os.21111.1.S1_at	2/11	6	+	28866479..28869892	Leucine Rich Repeat family protein, expressed
LOC_Os06g47710	OsAffx.15975.1.S1_at	10/11	6	+	28871389..28872807	expressed protein
LOC_Os06g47720	NA	NA	6	+	28873840..28877070	Leucine Rich Repeat family protein
LOC_Os06g47730	Os.49985.1.S1_at	1/11	6	+	28880110..28886003	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g47730	OsAffx.20303.1.S1_at	1/11	6	+	28880110..28886003	retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.52494.1.S1_at--565--665	1	Chr02:3038214..3038238 (25 bp)	GTTGATTGCAACCAGGCTCCTCATT	NONE
Os.52494.1.S1_at--991--783	1	Chr02:3038175..3038199 (25 bp)	GGATGGAAATTCTCCTGTAAACCTG	NONE
Os.52494.1.S1_at--387--23	1	Chr02:3038141..3038165 (25 bp)	ATATTCAGAACCTGCAGTGGCCGGT	NONE
Os.52494.1.S1_at--205--633	2	Chr02:3000520..3000541 (22 bp)	GATGAATTCAGCTCTTGCAGGTCCC	NONE
Os.52494.1.S1_at--1136--291	1	Chr02:3038058..3038082 (25 bp)	AAGGACGATGATGCTGCCAGAGGAC	NONE
Os.52494.1.S1_at--551--617	1	Chr02:3038039..3038063 (25 bp)	GAGGACATCAGCTCCTCAGGAAGGC	NONE
Os.52494.1.S1_at--869--813	2	Chr06:28852741..28852864 (24 bp)	GGACAGGTTGAGGTGATGCCTTCCC	LOC_Os06g47660
Os.52494.1.S1_at--632--889	1	Chr02:3037707..3037731 (25 bp)	TGAGAAAGGCATCCCTAGCCTGCTT	NONE
Os.52494.1.S1_at--213--215	1	Chr02:3037678..3037702 (25 bp)	ACAGAGAATGTGGTGCCTCCTTCAT	NONE
Os.52494.1.S1_at--296--951	2	Chr02:3037649..3037673 (25 bp)	TCTCCCATCACAGCAGTGTTTGGAC	NONE
Os.52494.1.S1_at--99--253	1	Chr02:3037559..3037583 (25 bp)	AACTGAATGCATGTTTCGAACCCTG	NONE

Target Sequence

GTTGATTGCAACCAGGCTCCTCATTTTCTCCCATGTGGTGGATGGAAATTCTCCTGTAAACCTGTTGCTTGAGATATTCA
GAACCTGCAGTGGCCGGTCAGATACTGATGAATTCAGCTCTTGCAGGTCCCCGTCGAGGCGGTTGAAGCTGACATCAAGG
ACGATGATGCTGCCAGAGGACATCAGCTCCTCAGGAAGGCCACCGGAGAGCAAGTTGTAGGACAGGTTGAGGTGATGCCT
TCCCACGCGCAGCAGTCGATGCCATTCCGCCACGACATGGCGATGCCATTGTCATGCGATAGCCCAGCAAGGAACCGGAG
GAGAGAGCTCTTCTCCTGCTCAAGGCATGCAATGGTGGAGTTGGCCATGGAGAGCAGCAGCAACAATAAGGCAGCAGCAG
CGAGACCTGAGAAAGGCATCCCTAGCCTGCTTCTCCACAGAGAATGTGGTGCCTCCTTCATGATCTCTCCCATCACAGCA
GTGTTTGGACTTAGAATTTGGCAACTAATATTTGTTCGCGAAAAGTTACACTGTTCGGTGAGGATATATATACACAACTG
AATGCATGTTTCGAACCCTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis