Browse Element(s) Details


Os.52518.1.S1_at

Description gb:AK070388.1
DB_XREF= gi:32980412
TID=Os.52518.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52518 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054G02, full insert sequence.
FL= gb:AK070388.1 gb:AK067627.1 gb:AK104323.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5151010/11Protein phosphatase 2C ABI2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51480Os.419.1.S1_at11/115+29428627..29436780DNA damage binding protein 1a, putative, expressed
LOC_Os05g51490Os.22562.1.S1_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os05g51490OsAffx.27405.1.S1_x_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os05g51500Os.12337.2.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.56152.1.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.12337.1.S1_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500OsAffx.29835.1.S1_x_at1/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51510Os.52518.1.S1_at10/115+29455174..29458747Protein phosphatase 2C ABI2, putative, expressed
LOC_Os05g51520Os.27568.1.S1_at11/115+29461830..29463367expressed protein
LOC_Os05g51530Os.15057.1.S1_at11/115+29464179..29468393Vacuolar ATP synthase subunit C, putative, expressed
LOC_Os05g51540Os.14691.1.S1_at11/115+29469257..29470753expressed protein
LOC_Os05g51550OsAffx.15198.1.S1_x_at11/115+29471513..29476608expressed protein
LOC_Os05g51550Os.54721.1.A1_at10/115+29471513..29476608expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0006970biological_processresponse to osmotic stress
GO:0009408biological_processresponse to heat
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52518.1.S1_at--575--7111Chr05:29455734..29455758 (25 bp)
GTCATCGGCCCAAATAAGCGGTGAT
LOC_Os05g51510
Os.52518.1.S1_at--999--2671Chr05:29455719..29455743 (25 bp)
AAGCGGTGATTCTTCAGATCCGGCT
LOC_Os05g51510
Os.52518.1.S1_at--213--2731Chr05:29455690..29455714 (25 bp)
AAGCAGCTGCCGACTACTTGTCCAA
LOC_Os05g51510
Os.52518.1.S1_at--1109--5931Chr05:29455590..29455614 (25 bp)
GAGCAAAGCATGACATTGCCTCCAT
LOC_Os05g51510
Os.52518.1.S1_at--412--3831Chr05:29455504..29455528 (25 bp)
CTGCTGCACCGGTACAATTTGTTTA
LOC_Os05g51510
Os.52518.1.S1_at--956--10451Chr05:29455482..29455506 (25 bp)
TTAGCTGCTGTTCAGTACTGGTGCT
LOC_Os05g51510
Os.52518.1.S1_at--923--9311Chr05:29455430..29455454 (25 bp)
TCGCCATTTATTTCTGCCGAGGGAT
LOC_Os05g51510
Os.52518.1.S1_at--413--10351Chr05:29455385..29455409 (25 bp)
TTTTCTACACGGTACAGACTCCCAA
LOC_Os05g51510
Os.52518.1.S1_at--853--951Chr05:29455257..29455281 (25 bp)
AGGACAGATTGGGTTTCTGCCTCTG
LOC_Os05g51510
Os.52518.1.S1_at--35--3831Chr05:29455241..29455265 (25 bp)
CTGCCTCTGGCATTAATCGTTTTTG
LOC_Os05g51510
Os.52518.1.S1_at--1084--10171Chr05:29455174..29455198 (25 bp)
TATACTCCTATATCTTTCTTGTGCC
NONE
Target Sequence 
GTCATCGGCCCAAATAAGCGGTGATTCTTCAGATCCGGCTGCTCAAGCAGCTGCCGACTACTTGTCCAAGCTTGCCCTAC
AGAAGGGGAGCAAGGACAACATCACTGTCGTTGTAATTGACCTCAAGGCACATAGGAAGTTCAAGAGCAAAGCATGACAT
TGCCTCCATGAACAATAACAATAGTTTATAGGAAGCTAGAAATGTGGGAAATCCAAGACAATTTATTTAGCTGCTGCACC
GGTACAATTTGTTTAGCTGCTGTTCAGTACTGGTGCTGCTGCAGCTGCAGCTGCTTCTTTGCCCTCGCCATTTATTTCTG
CCGAGGGATGTACTACTAGTATACTGTATTTTTCTACACGGTACAGACTCCCAAATCTGATTCAGGGTCGAGGACATAAG
GTGGATCTGGGAATTTTGGGGTCTCTCAAGACAAGACAGAAAACATAACAAAATCTGTAGATGTAGGTAGGAGTCCTAGG
ACAGATTGGGTTTCTGCCTCTGGCATTAATCGTTTTTGTTAACCGGNTAAANGATACNTGCTACTTGCNANTNCTGTTTC
ATATATACTCCTATATCTTTCTTGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52518.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis